Glutamicibacter sp. ZJUTW: F0M17_04340
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Entry
F0M17_04340 CDS
T06225
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
glu
Glutamicibacter sp. ZJUTW
Pathway
glu03030
DNA replication
glu03410
Base excision repair
glu03420
Nucleotide excision repair
glu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
glu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
F0M17_04340 (ligA)
03410 Base excision repair
F0M17_04340 (ligA)
03420 Nucleotide excision repair
F0M17_04340 (ligA)
03430 Mismatch repair
F0M17_04340 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
glu03032
]
F0M17_04340 (ligA)
03400 DNA repair and recombination proteins [BR:
glu03400
]
F0M17_04340 (ligA)
Enzymes [BR:
glu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
F0M17_04340 (ligA)
DNA replication proteins [BR:
glu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
F0M17_04340 (ligA)
DNA repair and recombination proteins [BR:
glu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
F0M17_04340 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
F0M17_04340 (ligA)
MMR (mismatch excision repair)
DNA ligase
F0M17_04340 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
F0M17_04340 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
PGRL1_N
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
QEP06525
LinkDB
All DBs
Position
923836..926121
Genome browser
AA seq
761 aa
AA seq
DB search
MEYVSEKDAAPVETANVPPEADKTRYEQLVEQIRAHREAYYQNDAPLVSDAEYDALFQEL
QLLEATYPILAGQDSPTQEVGGEASAAFASVTHASRMYSLEDVFSLDELDAWLERAQANA
ERLHPQTPVKWLCEVKIDGLALNLTYREGKLIRAATRGDGTTGEDVTHNALTISDIPQQL
SGSGWPAEFEVRGEVFIATEDFNKFNEALIAQGKAPLANPRNAAAGSLRQKDPEQTAKRP
LRMFVHGLGRSRDFNLTEQSQAYELMRSWGLPVSPYGRVVGSRQEAKDYIAEHGEKRHDL
IHDIDGIVIKVDDLATQEQLGYTSRVPRWAVAYKYPPEEVHTKLLDIQVQVGRTGRVTPF
GVMEPVLVAGSTVARATLHNQEVVKAKNVKIGDTVILRKAGDVIPEIVGPVLPLRDGNEN
LRDFVMPTECPSCGQPLAPAKEGDVDIRCLNAESCPAQLTERVAYLAGRSALDIEALGYE
AAAALTSGPGEDPATQGGVILPAGPGPLKNEADLFNLKDKLDELGEVKVWREKRSKGEDT
GKYELVPYFYSKATAKKPSVPTKSTLKLLDELEKAKGNPLWRVLVALSIRHVGPNASRAI
ATRYGSMDALLQVLDSGNAVAELAEIDSVGTIIAEALVDWFTVDWHREIVSSWQASGVQM
EDEQDANITKNLEGLAIVVTGTLENYSRDTAKEAIIVRGGKATGSVSKKTDFLVAGESAG
SKLDKAQSLGVPVLDEAGFGILLEQGPEAARKAALTAPTEG
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
attgaatacgtgagtgaaaaagacgcagcaccagtcgagaccgccaacgtaccgccggaa
gctgacaagacccgctatgaacagctggtcgagcagatccgcgcccaccgcgaggcctat
taccaaaatgatgctcccctggtctccgacgcagaatacgacgcgttattccaggagctc
cagctgcttgaggcgacctatcccatccttgctggacaggattcgcccacccaggaagtc
ggcggcgaagcctccgccgccttcgcatcggtcacccacgccagccggatgtactcgctg
gaagacgtcttctcacttgatgaactcgacgcgtggctggagcgtgcccaggccaatgcc
gaacgcctgcacccgcagaccccggtcaaatggctgtgcgaagtcaaaatcgacggcctg
gcactgaacctgacctaccgcgagggcaagctgattcgcgcggccacccgcggggacggc
accaccggagaagacgtgacccacaatgcgctgaccatcagcgatatcccgcaacagctg
tccggctccggctggcctgcggaattcgaagtccgcggcgaagtcttcatcgccaccgag
gacttcaacaagttcaacgaggcactgatcgcccagggcaaggcgccgctggccaacccg
cgcaacgccgccgccgggtccttgcgccagaaggatccggagcagaccgccaagcgtccg
ctgcgcatgttcgtgcatggcctgggccgcagccgcgatttcaacctgaccgagcagtcc
caggcctatgagctgatgcgcagctggggcctgccggtctctccgtacggccgcgtggtc
ggcagccgccaggaagccaaggattacatcgccgagcacggcgagaagcgccacgatttg
atccacgacatcgatggcattgtcatcaaggtcgatgacctggccacccaggaacagctg
ggctacacctcgcgggttccgcgctgggccgtcgcctacaagtacccgcccgaagaagtg
cacaccaagctgctggacatccaggtccaggtgggccgcaccggccgcgtgacccccttc
ggcgtgatggaaccagtcctcgtcgccggctccaccgtcgcgcgcgcgactttgcacaac
caggaagtcgtcaaggcgaaaaacgtcaaaatcggcgacacagtcatcctgcgcaaggcc
ggagacgtcatcccggagattgtcggcccggtgctcccgctgcgcgatggcaacgagaac
ctgcgtgatttcgtcatgcccaccgaatgcccttcctgcgggcagccgctggccccggcc
aaggaaggcgacgtggatatccgttgcctcaacgctgaatcctgcccggcacagctcacc
gagcgcgtggcctaccttgccggacgcagtgcactggacatcgaagccctcggctacgaa
gcggctgctgccctgaccagcggtccgggcgaggacccggccacccagggcggcgtcatc
ctgcccgccggacccggcccgctgaagaacgaggccgacctgttcaacctcaaggacaag
ctcgatgagcttggcgaggtcaaggtctggcgggaaaagcgctccaagggggaggacacc
ggcaagtacgagctcgtcccgtacttctattccaaggccaccgccaaaaagccttcggtg
ccgaccaagagcaccctgaagctgcttgatgagctggagaaggccaagggcaacccgctg
tggcgggtgctggtagccctgtccatccgccacgtcggcccgaacgcctcgcgggccatt
gccacccgctacggctccatggacgccctgcttcaggtcctggactcgggcaacgcggtg
gcggaactggccgaaatcgattcggttggcaccatcatcgccgaagcgctggttgactgg
ttcacggtggattggcaccgcgagatcgtctcctcctggcaggcctccggcgtgcagatg
gaagacgagcaggatgcgaacatcaccaagaacctcgaaggcctggccatcgtggtgacc
ggtaccctggagaactattcccgggataccgccaaggaagcgatcattgtccgtggcggc
aaggccaccggcagcgtctcgaagaagaccgacttcctggtggccggcgaatccgccggg
tcgaagctggacaaagcccagtccctgggcgttccggtactggacgaagccggattcggc
atcctgctggagcaaggaccggaagcagcacgcaaggcagcactcaccgcaccaacggaa
ggctag
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