Glycomyces sp. TRM65418: K3N28_20140
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Entry
K3N28_20140 CDS
T07425
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gly
Glycomyces sp. TRM65418
Pathway
gly03030
DNA replication
gly03410
Base excision repair
gly03420
Nucleotide excision repair
gly03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K3N28_20140 (ligA)
03410 Base excision repair
K3N28_20140 (ligA)
03420 Nucleotide excision repair
K3N28_20140 (ligA)
03430 Mismatch repair
K3N28_20140 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gly03032
]
K3N28_20140 (ligA)
03400 DNA repair and recombination proteins [BR:
gly03400
]
K3N28_20140 (ligA)
Enzymes [BR:
gly01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K3N28_20140 (ligA)
DNA replication proteins [BR:
gly03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K3N28_20140 (ligA)
DNA repair and recombination proteins [BR:
gly03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K3N28_20140 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K3N28_20140 (ligA)
MMR (mismatch excision repair)
DNA ligase
K3N28_20140 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K3N28_20140 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QZD57942
LinkDB
All DBs
Position
4383198..4385435
Genome browser
AA seq
745 aa
AA seq
DB search
MDGTAPERSNDADFERARERHETLAAEITEHRRRYYLAEPTISDSQFDELFHELIDIETA
HPELQSNDSPTQQVGTFSEAFTPVAHLEKMLSLQDVFSLEEVQAWADRITAEVPGEPYLC
EVKIDGLAVDLVYEHGRLARAATRGDGTTGEDVSANVATIDAVPQRLKAAEGFDVPELLE
VRGEVYFPTDEFDRLNESQVAAGKAPFANPRNAAAGSLRQKDPSKTAERPLSFIAHGLGA
LKGFEPQSQSHSYAALEAWGLPTSPYWRVVDTIDEVFAYIHEFGEQRHSLVHEIDGVVVK
IDRLGTQRRLGATSRVPRWAVAYKFAPEEVNTELLDIKVSIGRTGRATPYAVLEPVRVAG
SEVEFATLHNADQVKAKGVKIGDTVVVRKAGDVIPEVVAPVAAARDGSETDFVMPERCPE
CDSVLAPASEGDVDLRCPNARSCPGQLRERLAYLSGRSCFDVDRMGYIACSALVEPLDTD
PVLVDEGGVFDLRIEDLLPIKVVVRDPDSGLPKIVEATGEPKVVTPFAKQPDKKTGEILP
RKNAEEMLENLEKAKRQPLWRVINALSIRHVGPVAAQALAEHFGDLDRIAEADESAIAAV
DGVGPTIAAAVKDWFAVDWHRAIVERWRAAGVRMQDDAPDPSELPPQTLEGLTVVITGGI
PGYTREGAAAAVKARGGKTTSSVSKKTGAVVAGDKPGSKYDKALTLGVPIVRGEDFERFL
ADGLPPAEPEAESDSEASSVGSEPE
NT seq
2238 nt
NT seq
+upstream
nt +downstream
nt
ctggacggtaccgcacccgaacgttcgaacgacgctgatttcgagcgcgcccgcgagcgc
cacgaaacgctggccgcggagatcaccgagcaccggcggcgctactacctcgccgagccc
acgatctcggacagtcagttcgacgagctcttccacgagctgatcgacatcgagacggcc
catcccgagctccagagcaacgactcgcccacgcagcaggtcggcaccttctccgaggcg
ttcacgcccgtcgcgcacctggagaagatgctcagcctccaggacgtgttcagcctcgaa
gaggtccaggcctgggccgaccggatcaccgccgaggtccccggcgagccgtacctgtgc
gaggtcaagatcgacgggctcgccgtcgacctcgtctacgagcacggccgcctcgcccgc
gcggccacccgcggcgacgggaccaccggcgaggacgtctccgcgaacgtcgccaccatc
gacgccgtcccgcagcgcctcaaggccgccgagggcttcgacgtgcccgagttgctggag
gtccgcggcgaggtctacttcccgaccgacgagttcgaccggctcaacgaatcccaggtc
gccgccggcaaggccccgttcgccaacccgcgcaacgccgccgccgggtcgctgcggcag
aaggacccctccaagaccgccgagcggcccctgagcttcatcgcccacggcctcggcgcg
ctcaagggcttcgagccgcagtcgcagtcccactcctacgccgcgctcgaggcctggggc
ctgccgacgagcccgtactggcgcgtcgtcgacaccatcgacgaggtcttcgcctacatc
cacgagttcggcgagcagcgccactcgctcgtccacgagatcgacggcgtcgtcgtgaag
atcgatcggctcgggacgcagcgccgcctcggcgcgacctcccgcgtgccccgctgggcc
gtggcctacaagttcgcgcccgaggaggtcaacaccgagctcctcgacatcaaggtctcc
atcggacgcaccggccgcgccacgccctacgcggtgctcgaacccgtgcgcgtcgccggc
tccgaagtcgagttcgcgaccctccacaacgccgaccaggtcaaggccaagggtgtcaag
atcggcgacaccgtcgtcgtccgcaaggccggagacgtcatccccgaggtcgtcgcgccg
gtcgccgccgcccgcgacggctccgagaccgacttcgtcatgcccgagcgctgccccgaa
tgcgacagcgtgctcgcgcccgcctccgaaggcgacgtcgacctgcgctgccccaacgcc
cgctcctgccccgggcagctgcgcgagcgcctcgcctacctctcgggacgttcctgcttc
gacgtcgaccgcatgggctacatcgcctgctcggcgctcgtcgaaccgctcgacaccgac
ccggtcctggtggacgagggcggcgtcttcgatctcaggatcgaggacctgctgcccatc
aaggtggtcgtccgcgacccggactcgggcctccccaagatcgtcgaggcgaccggcgag
ccgaaggtcgtcacgccgttcgccaagcagcccgacaagaagaccggtgagatcctcccg
cgcaagaacgccgaggagatgctcgagaacctcgagaaggccaagcggcagccgctgtgg
cgcgtgatcaacgcgctctccatccgccacgtcggacccgtcgcggcccaggccctcgcc
gagcacttcggcgacctcgaccgcatcgccgaggccgacgagtcggcgatcgccgccgtc
gacggcgtcggcccgaccatcgcggccgccgtcaaggactggttcgccgtcgactggcac
cgcgcgatcgtcgagcgctggcgcgcggccggcgtgcgcatgcaggacgacgcgcccgac
ccgtccgagctcccgccgcagaccctcgaaggcctcaccgtcgtgatcaccggcggcatc
cccggctacacccgcgagggcgcggccgcggccgtgaaggcccgcggcggtaagaccacg
tcctcggtctcgaagaagaccggcgcggtcgtcgcgggggacaagcccggatcgaagtac
gacaaggccctgacgctcggggtcccgatcgtccgcggcgaggatttcgagcggttcctc
gccgacggcctccccccggccgaacccgaggccgagtccgattcggaggcctccagtgtc
gggagcgaaccggaatga
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