Granulicella mallensis: AciX8_4264
Help
Entry
AciX8_4264 CDS
T01664
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gma
Granulicella mallensis
Pathway
gma03030
DNA replication
gma03410
Base excision repair
gma03420
Nucleotide excision repair
gma03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gma00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AciX8_4264
03410 Base excision repair
AciX8_4264
03420 Nucleotide excision repair
AciX8_4264
03430 Mismatch repair
AciX8_4264
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gma03032
]
AciX8_4264
03400 DNA repair and recombination proteins [BR:
gma03400
]
AciX8_4264
Enzymes [BR:
gma01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AciX8_4264
DNA replication proteins [BR:
gma03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AciX8_4264
DNA repair and recombination proteins [BR:
gma03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AciX8_4264
NER (nucleotide excision repair)
GGR (global genome repair) factors
AciX8_4264
MMR (mismatch excision repair)
DNA ligase
AciX8_4264
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AciX8_4264
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
BRCT_2
5_3_exonuc
HHH_3
DZR_2
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
AEU38541
UniProt:
G8NSG5
LinkDB
All DBs
Position
complement(5440078..5442249)
Genome browser
AA seq
723 aa
AA seq
DB search
MAHTPSNALSPDQQIEALREDLRHHEHLYYVLDAPELTDAQYDARMNELRRLETEHPELV
TPDSPTQRVGGKPKEGFAKVAHSRPMLSLDNAYNEAELRAWAERVVSGLPSGEVVRFVCE
LKLDGLSLALQYDAGAKHEAVLKTGVTRGNGTIGEDVTTNVRTIRSVPLHIQAAKLAKAG
LPQQFEVRGEVVLPQKAFEKMNAEREAAGLAPAANPRNAAAGTIRTLEPNIVAQRRLEFF
AYFLLREGEPLLAEQSSALQALREAGFLVNKHARTVGSIDEVLAFINEAEPLRDGLPYEI
DGVVIKVDAIAQQRRLGFTGKAPRWAIAYKFPARAAVTRLDDVLFQVGRTGKVTPVAALA
PVFIGGTTVTRATLHNADEIARLGVRVGDFVSVERGGDVIPKITEVVEDAKHPRGTSEII
FPSHCPVCGSELVRAEGEVDWRCINAVCPARVREELLHWAARGVMNIEGLGESMVAQLLG
QAEEDSESAEGRSGLQPGLSESVSDEGLQTGLAEPIKTSHEPLIRSIADLYSLTREQLLT
LERVGEKTADALLAEIERSKQAPLARVLFGLGIRFVGERTASLLAEHFGSLDDLMKASAE
DLEAVNEVGPRVAQAIVEFFAEEKNRELVEKLRTVGLTFTAEKRVVGTTFAGLTFVLTGT
LPTLTRDEAKQRIEDAGGKVSGSVSKKTSYVVAGEDAGSKLEKAQQLGVAVLDEAGLLAL
IAG
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atggcccacacaccctccaacgccctttcacccgaccagcagatcgaagccctgcgcgaa
gatctgcgccaccacgagcacctctattacgtgctcgatgcgccggaactgaccgatgcg
cagtacgacgcgcgcatgaatgagctgcggcggctggagaccgagcacccggagctggtg
accccggattcgccgacacaacgcgtgggtggcaagccaaaagagggctttgcaaaggtc
gcgcactcgcgtcccatgctctcgctcgacaatgcctataacgaggctgaactgcgcgcc
tgggcggagcgcgtggtgtccggtcttcccagtggcgaagtcgtgcgcttcgtctgcgag
ctcaagctggacggtctttcgctggctctccagtatgacgccggagcgaagcatgaagcg
gtgttgaagacgggtgtcacgcggggcaacggaaccatcggcgaagacgttacgacgaac
gtccgcaccattcgcagtgtgccgctgcatattcaggctgcaaagctggcgaaggccggt
ctgccacaacagttcgaggtgcgcggtgaggttgtgctgccgcagaaggccttcgagaag
atgaacgcagagcgtgaggccgccgggcttgcgcccgcagcgaacccccgcaacgcagcg
gcaggaacgatccgtacgctcgagcccaatatcgttgcacagcggcggttggagttcttc
gcgtatttcctgctgcgagagggagagcccctgctcgcggagcagagctcggccctgcag
gcccttcgtgaagccggcttcctcgtcaacaaacatgcacggacggttggttcgatcgac
gaggttctggcgttcatcaacgaagccgaacccctgcgcgatggtctgccgtatgagatc
gacggagtggtgatcaaggttgacgctatcgcccagcagcgccgccttggctttacgggc
aaggctcctcgctgggccatcgcctacaagtttcccgcgcgcgctgctgtaacccggctc
gatgatgtgctgtttcaggtaggccgcacgggcaaggtgacgccggtagccgcacttgcc
cctgtgttcatcgggggaacgacggtgacgcgtgccacgctgcacaacgctgacgagatc
gcgcggcttggcgttcgggtcggcgacttcgtctcggtcgagcgtggcggcgacgtgatt
cccaagatcaccgaggtggtagaagacgcgaagcatccgcgcggcacaagcgagattatc
ttcccgagccattgcccggtctgcggcagcgaactggtgcgagctgagggcgaggtggat
tggcgctgcatcaatgcggtgtgcccggcacgggtacgcgaggagttgctgcactgggcg
gcgcgcggcgtgatgaacatcgaaggcctcggcgagtcgatggtggcgcagttgcttggc
caggcggaggaagacagcgagtcagcagagggtaggtccgggcttcagcccggacttagc
gagtcagtgagtgatgaggggcttcagaccgggcttgctgagccgataaagacatcgcac
gagccgctgattcgcagtattgccgatctctactcgcttacgcgcgaacagttgctcacg
cttgagcgtgttggtgaaaagaccgcggatgcactgctggcggagattgagcgttcaaag
caggcacccctggcgcgtgtgctctttggcctggggattcgctttgtcggcgagcgtacg
gcgagtctgttggcggagcacttcggtagcctcgacgacctgatgaaggcctctgccgag
gatctggaagctgtgaacgaagtaggaccacgtgtagcgcaggctatcgtcgagttcttt
gcggaggagaaaaaccgcgagctggtggagaagttacgcactgtggggcttaccttcaca
gcggagaagcgtgttgtcggcacaacgtttgcagggctgacctttgtgctcacggggacg
ttgcccaccttgactcgcgatgaagcgaagcagcgcattgaagatgctggcggcaaggtt
tcgggttccgtgagcaagaagacgagctatgtggtcgcgggtgaagatgcgggatcgaag
ttggagaaggcacagcagcttggggttgcggtgttggatgaggcagggttgctggcgttg
attgctgggtag
DBGET
integrated database retrieval system
