Globicephala melas (long-finned pilot whale): 115840468
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Entry
115840468 CDS
T11080
Symbol
KDM2A
Name
(RefSeq) lysine-specific demethylase 2A
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
gmf Globicephala melas (long-finned pilot whale)
Pathway
gmf03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
115840468 (KDM2A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gmf03000
]
115840468 (KDM2A)
04121 Ubiquitin system [BR:
gmf04121
]
115840468 (KDM2A)
03036 Chromosome and associated proteins [BR:
gmf03036
]
115840468 (KDM2A)
Enzymes [BR:
gmf01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
115840468 (KDM2A)
Transcription factors [BR:
gmf03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
115840468 (KDM2A)
Ubiquitin system [BR:
gmf04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
115840468 (KDM2A)
Chromosome and associated proteins [BR:
gmf03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
115840468 (KDM2A)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
115840468 (KDM2A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
JmjC
Cupin_8
LRR_4
Cupin_1
Motif
Other DBs
NCBI-GeneID:
115840468
NCBI-ProteinID:
XP_030689260
LinkDB
All DBs
Position
8:complement(5508140..5611083)
Genome browser
AA seq
1162 aa
AA seq
DB search
MEPEEERIRYSQRLRGTMRRRYEDDGISDDEIEGKRTFDLEEKLHTNKYNANFVTFMEGR
DFNVEYIQRGGLRDPLIFKNSDGLGIKMPDPDFTVNDVKMCVGSRRMVDVMDVNTQKGIE
MTMAQWTRYYETPEEEREKLYNVISLEFSHTRLENMVQRPSTVDFIDWVDNMWPRHLKES
QTESTNAILEMQYPKVQKYCLMSVRGCYTDFHVDFGGTSVWYHIHQGGKVFWLIPPTAHN
LELYENWLLSGKQGDIFLGDRVSDCQRIELKQGYTFVIPSGWIHAVYTPTDTLVFGGNFL
HSFNIPMQLKIYNIEDRTRVPNKFRYPFYYEMCWYVLERYVYCITNRSHLTKEFQKESLS
MDLELNGLESGNGDEEAVDREPRRLSSRRSVLTSPVANGVNLDYDGLGKTCRSLPSLKKT
LSGDSSSDSSRGSHNGQVWDPQCSPRKDRQVHLTHFELEGLRCLVDKLESLPLHKKCVPT
GIEDEDALIADVKILLEELANSDPKLALTGVPIVQWPKRDKLKFPTRPKVRVPTIPITKP
HTMKPAPRLTPVRPAAASPIVSGARRRRVRCRKCKACVQGECGVCHYCRDMKKFGGPGRM
KQSCVLRQCLAPRLPHSVTCSLCGEVDQNEETQDFEKKLMECCVCNEIVHPGCLQMDGEG
LLNEELPNCWECPKCYQEDSSEKTQKRKMEESDEEAVQAKVLRPLRSCDEPLTPPPHSPT
SMLQLIHDPASPRGVVTRSSPGAGPSDHHSASRDERFKRRQLLRLQATERTMVREKENNP
SGKKELSEVEKAKIRGSYLTVTLQRPTKELHGTSIVPKLQAITASSANLRHSPRVLVQHC
PARTPQRGDEEGLGGEEEEEEEEEEEDDSAEEGGAARLNGRGSWAQDGDESWMQREVWMS
VFRYLSRRELCECMRVCKTWYKWCCDKRLWTKIDLSRCKAIVPQALSGIIKRQPVSLDLS
WTNISKKQLTWLVNRLPGLKDLLLAGCSWSAVSALSTSSCPLLRTLDLRWAVGIKDPQIR
DLLTPPADKPGQDNRSKLRNMTDFRLAGLDITDATLRLIIRHMPLLSRLDLSHCSHLTDQ
SSNLLTAVGSSTRYSLTELNMAGCNKLTDQTLIYLRRIANVTLIDLRGCKQITRKACEHF
ISDLSINSLYCLSDEKLIQKIS
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atggaacccgaagaagaaaggattcgttacagccagagattgcgtggtaccatgcgacga
cgctatgaagatgatggcatttcagatgatgaaattgaaggaaaaagaacttttgacttg
gaagagaaactccacaccaacaaatataatgcaaattttgttacttttatggaaggaaga
gattttaatgtagagtatatccagcgaggtggcttaagagatcctctgattttcaagaac
tccgatggacttggaataaagatgccagatccagacttcactgtgaatgatgtcaaaatg
tgtgtggggagtcgtcggatggtggatgtcatggatgtgaacacacagaaaggcattgaa
atgaccatggctcagtggacacgctactatgagaccccagaggaggagcgagaaaaactc
tataatgtcatcagcctggagtttagccacaccaggctggagaatatggtgcagcggccc
tccacggtggatttcattgactgggtagacaatatgtggccaaggcatttaaaagaaagt
cagactgagtcaacaaatgccatcttggagatgcagtaccctaaagtgcagaagtactgt
ctgatgagtgttcgaggctgctatactgacttccatgtggactttggtggtacctctgtt
tggtatcacatccatcaagggggaaaggtcttctggctcatcccccctacagcccacaac
ctggagctgtacgagaattggctgctgtcagggaaacagggagacatctttctgggtgac
cgggtgtcagattgccagcgcattgagctcaagcagggctataccttcgtcattccctca
ggctggattcatgctgtgtatactcctacagacacattagtgtttggaggcaattttttg
catagcttcaatatccctatgcagttaaaaatatacaacattgaagatcggacacgggtt
ccaaataagttccgctatccattctactatgaaatgtgttggtacgtgttggagcgctat
gtgtactgcataaccaaccgttcccacctaactaaggaatttcagaaagagtcccttagc
atggatttggagttaaatgggttggagtctggaaatggggatgaggaagcagtagatcga
gaaccccggcgcttgagcagcaggcgttctgtcctcactagccctgtagccaatggggtt
aacctggattatgatggactgggcaaaacctgccgaagtcttccaagtctgaagaaaact
ttgtctggggactcatcctctgactctagccggggctcccacaatggccaagtatgggat
ccccagtgtagccccagaaaggaccgacaggtgcatctgacccattttgagcttgaaggc
cttcgttgccttgtagataaattggagtctctgccactgcacaagaaatgtgtccctaca
gggatagaagacgaggatgctctcattgctgatgtaaagattttgctggaggagcttgcc
aacagtgatcccaagttagccctcactggagtccctattgtacagtggccgaaaagggat
aagcttaaattcccgacccggccaaaggtgcgggttcctaccatccccatcacaaagcct
cacactatgaaaccagctccacggttaacacctgtgaggccagctgctgcctcccccata
gtgtcaggagccaggcggagacgagtgcgatgtcgaaaatgcaaagcctgtgtgcaagga
gagtgtggtgtctgccactactgcagggacatgaagaagtttgggggccctggtcgcatg
aagcagtcctgtgttctccggcagtgcttggcacccagactgcctcactcagtcacgtgt
tccctctgtggagaggtggatcaaaatgaggagacacaggactttgagaagaaactcatg
gaatgctgtgtctgcaacgagattgttcatcctggctgcctccagatggatggagagggt
ttgcttaacgaggaattgccaaattgctgggagtgtccaaagtgctaccaggaggacagc
tcagagaaaacccagaagcggaaaatggaagagagtgacgaagaagccgtgcaagccaaa
gtcctgcggcccctgcggagctgcgacgagcccctcacgcccccacctcactcgcccacc
tccatgctgcagctcatccacgacccggcctccccccggggcgtggtgactcgttcatcc
cctggggccggccccagcgaccaccacagtgccagccgcgatgagcgcttcaaacggcgg
cagttgctgcggctgcaggccacagagcgcaccatggtacgggaaaaggagaacaacccc
agcggcaaaaaggagctgtctgaagttgagaaagccaagatccggggatcgtacctcact
gtcacgctacagaggcccaccaaagagctccacgggacatccattgtgcccaagctgcag
gccatcacggcctcctctgccaaccttcgccattccccccgtgtgctagtgcagcactgc
ccagcccgaaccccccagcgtggggatgaggaggggctggggggagaggaggaggaagag
gaggaggaggaggaggaagatgacagtgcagaggaggggggtgcagccaggctgaatggc
cggggcagttgggctcaggatggagacgaaagctggatgcagcgggaggtctggatgtct
gtcttccgctacctcagccgcagagaactttgtgaatgtatgcgagtgtgcaagacgtgg
tataaatggtgctgcgacaagagactttggacaaaaattgacttgagtaggtgtaaggct
attgtaccccaggctctcagtggcatcatcaagaggcagccagttagcctcgacctcagt
tggaccaacatctccaaaaaacaactgacgtggctcgtcaataggctgccaggactgaaa
gacctcctcctggcaggctgctcctggtctgcagtctctgccctcagcacctccagctgc
ccccttctcaggacccttgatcttcggtgggcagtaggaatcaaggaccctcaaattcgg
gacttgctgactccaccggctgataaaccaggtcaggacaatcgcagcaagctccggaac
atgactgacttccggctggcgggccttgacatcacagatgccacgcttcgcctcatcatc
cgccacatgcccctcctgtctcgactcgacctcagtcactgcagccacctgacagatcag
tcctccaatctactcaccgctgttgggtcttccactcgttactccctcacagagctcaac
atggcaggttgcaataaattgacagaccagaccctgatctacctacggcgcatcgccaac
gtcaccttgatcgaccttcgaggatgcaagcagatcacccgaaaagcctgcgagcacttc
atctcagacttgtccatcaacagtctctactgcctgtctgacgagaagctgatacagaag
atcagctaa
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