Globicephala melas (long-finned pilot whale): 115842080
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Entry
115842080 CDS
T11080
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
gmf Globicephala melas (long-finned pilot whale)
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gmf03036
]
115842080 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
gmf03400
]
115842080 (SMCHD1)
Chromosome and associated proteins [BR:
gmf03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
115842080 (SMCHD1)
DNA repair and recombination proteins [BR:
gmf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
115842080 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
Ig_SMCHD1_5th
Ig_SMCHD1_1st
Ig_SMCHD1_8th
Ig_SMCHD1_7th
Ig_SMCHD1_6th
Ig_SMCHD1_2nd
Ig_SMCHD1_4th
SMC_hinge
HATPase_c_3
HATPase_c
IFT20
DUF4763
Motif
Other DBs
NCBI-GeneID:
115842080
NCBI-ProteinID:
XP_030692550
LinkDB
All DBs
Position
13:54714629..54843379
Genome browser
AA seq
1997 aa
AA seq
DB search
MAAADDGGPSVGTGEGDGGDGSRTVYLFDRREKESELGDRALQVTERSDFAAFRASVCQT
LGISPEEKFVITTTSRKEITCDNFDETVKDGVTLYLLQSVSQLLLTATKERIDFLPHYDT
LVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNTGVRRIQIKLHFDETQGKPAVAVI
DNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPLPVPRSLNSDISYFGVGGKQAV
FFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKPSDSVHITNDDE
RFLHHLISEEKEKDSFTAVVITGVQPEHIQYLKNYFLLWTRQLTHIYHYYIHGPKGNEKR
ASKEVGPFNNIDIEISMFEKGKTPKIINLREIQDDMQTLYINTAADSFEFKAHVEGDGVV
EGIIRYHPFLYDRETYPDDPCFPSKLKDEDDDDDCFILEKAARGKRPIFECFWNGRLIPY
TSVEDFDWCTPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLFT
RILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTLFKGIITRPDLPSKKQGPWATYSAIE
WDGKIYKAGQLVKTIKTLPLFYGSIVKFFLYGDHDGEVYATGGEVQIAMEPQALYDEIKT
VPIAKLDRTVAEKAVKKYVEDEMARLPDRLSVTWPEGDELLPNEIRPAGTPIGALRIEIL
NKKGEAMQKLPGTSHGGSKKLLVELKVILHSPNGNKEIISHISQHGGKWPYWFKKMENIQ
KLGNYTLKLQVVLNESNADTYAGRPLPSKAIKFSVKEGKPEKFSFGPLDLPFRVGVPFNI
PLEFQDEFGHTSQLSTDIQPVFEASGLSLRYEEITKGPNCVIRGVTAKGPVNSCQGKNFT
LKVIFPGLKEDSKVQKIRLLPGPPHRLKVKPDSEILVIENGTAFPFQVEVLDESDNITAQ
PKLIVHCKFSGAPNLPLYVVDCSSSGTSILSGPAIQVQNIKKDQTLKAKIEIPSCKDVAP
VEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDTMHNLIFQMYDEGEREIHI
TSALAEKIKVNWTPEINKEHLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFTVRP
LPDEPKHLKCELKGGKTVQMGQELQGEIVIIVTDQYGNQIQAFSPSSLSSLGIAGIGLDS
SHLKTTFQENTQSISVRGIKFIPGPPGNKDLCFTWREFSDFIRVQLISGPPAKLLIVDWP
ELKESIPVINGRELQNPLIVQLCDQWDNPALVPQVKISLIKANNLKLTPSNQQHKTDERG
RANLGVFSVYAPRGEHIMQVKAIYNKNTIEGPIIKLMILPDPEKPIRLNVKYDKDASFLA
GGIFTDFMITVISEDDSIIKNINPARISMKMWKLSNSGNRPPANAEIFSCNKIKDNDKED
GCFYFRDKAIPNKVGTYCIQFGFMMDKANILNSEQIIVDVLPNQPVKLVPEIQPATPAVS
NVRSVASRTLVKDLYLRITDGYNNHTGIDLVGTVMATIKGSNEEDDTPLFIGKVRTLEFP
FVKGSAEITSLVLAENSPGRDSTEYFIVFEPRLPGLSRTLESYILPFMFYNDVKKQQQMA
ALTKEKDQLSKSIIMYRSLFDASKQLLDEMKCQVEEAKLKEAQLRNELKTHNIDIPTTQQ
MPHIEALLKNKMSEQEELKKKPRRSCTLPNYTKGSGDVLGKIAHLAQIEDDRAAMVISWH
LASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYKKTLPDWKRPLPHYRNGKLYFKPI
GDPVFARDLLTFPDNVEHCETVFGMLLGDTIILDNLDAANHYRKEVVKITYCPTLLTRDG
DRIRSNGKFGGLQNKAPPMDKLRGMVFGAPVPKQCLILGEQIDLLQQYRTAVCRLGTVNK
DLNGQLEYLHTPDMKKKKQELDEQEKNLKLIEQKLGMTPTRKCNDSLRHPMTDCPVPPKR
MRREVTRQNRIITKTDV
NT seq
5994 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggcggacgacggcgggccctcggtggggaccggagagggcgacggaggcgac
ggctccaggacggtgtacttgtttgaccggcgcgagaaggagtcggagctcggggaccgg
gcgctgcaggtcacggagcgctcggactttgcggcgttccgcgcttcagtgtgtcagaca
cttggcatttcacctgaagaaaaatttgttattacaacaacaagtaggaaagaaattacc
tgtgataattttgatgaaactgttaaagatggagtcactctgtacctgctacagtcagtc
agtcagttactactaacagctacaaaagaacgaattgacttcctacctcactatgacaca
ttggttaaaagtggcatgtatgaatattatgcaagtgaaggacaaaatcctttaccattt
gctcttgcagaattaattgataattcattgtctgccacgtctcgtaacactggtgttaga
agaatacagatcaaattgcattttgatgaaacacaaggaaaacctgccgttgcagtgata
gataatggaagaggaatgacctctaaacagcttaacaactgggccgtgtataggttgtca
aaatttacaaggcaaggtgactttgaaagtgatcattcaggatatgttcgaccactacca
gtgccacgcagtttaaatagtgatatttcctattttggtgttgggggcaagcaggctgtt
ttctttgttggacaatcagccagaatgataagcaaacctgcagattcccaggatgttcat
gaacttgtactttctaaagaagattttgagaagaaggagaaaaataaagaggcaatatat
agcggatatattagaaacagaaagccgtctgattctgttcacattacaaatgatgatgaa
agatttctacatcatcttatctcagaggagaaggaaaaagatagctttactgctgtggtt
atcacaggggtacaaccagaacacatacagtacttgaaaaattatttccttctttggacg
agacagttaacgcatatttatcattactatattcatggcccaaaagggaatgaaaaacgt
gcatcaaaggaagttggacctttcaacaacattgatattgaaatttctatgtttgaaaag
gggaagacacctaagattatcaacctaagggaaatacaagatgacatgcagacgttgtat
ataaatacagcagccgatagttttgagttcaaggctcatgttgaaggagatggtgtagtg
gaagggattatccgatatcacccttttttatatgatagagaaacgtatcctgatgatcca
tgctttccatcaaaattaaaagatgaagatgatgatgatgactgtttcatacttgagaaa
gcagcaagagggaaaagacctatttttgaatgtttttggaatggacgactaataccatat
acatctgttgaagactttgactggtgtactcctcctaagaagagagggcttgcaccgatt
gagtgctacaataggatatctggtgcattattcactaatgacaaattccaggtcagcaca
aataaactgacctttatggatcttgagctaaaattgaaagataagaacaccctttttaca
aggattttaaatggacaggagcagcgaatgaaaattgacagagaatttgctctatggctg
aaggactgtcatgaaaagtatgacaaacaaataaaatttacactttttaaaggaataatt
acacgtcctgatcttccttctaaaaagcagggcccctgggcgacttattcagcaatagaa
tgggatggaaaaatatacaaagcaggacaactggtcaagacaatcaagacacttcctctc
ttttatggaagcattgtaaaattttttctttatggtgatcatgatggagaagtatatgct
acaggaggagaggttcaaattgcaatggaacctcaggcactgtatgatgaaataaaaact
gtgccaattgcaaagctggataggacagttgctgagaaagctgtgaaaaaatatgtagaa
gatgaaatggcaaggctccctgatagattgtcagtaacttggcctgaaggagatgaatta
ttgccaaatgagattaggcctgctggaacccccattggtgcattaagaattgaaatattg
aataaaaagggggaagcaatgcaaaagcttccaggaacaagtcatggagggtcaaagaaa
ctcctggttgagctcaaagttatactacactctccaaatggaaataaagaaatcatttca
catattagtcaacatggaggaaaatggccttactggtttaaaaaaatggaaaatattcaa
aagttggggaattatacattgaaattacaagttgtactgaatgaaagtaatgcagacact
tatgcaggaagaccactaccatctaaagcaattaaattttctgtcaaagagggtaaacca
gagaaattttcatttggtcctttggatcttccttttcgtgttggagtcccattcaatatc
cctctggagtttcaggatgaatttggtcatactagtcaactatcaactgatattcagcca
gtttttgaagcaagtggtttatctttacgttatgaagaaataaccaaaggcccaaattgt
gtcattcgaggtgttacagctaagggccctgtaaactcttgtcaaggcaagaattttact
ctgaaggttatttttccgggtttaaaagaagactcaaaggttcagaaaattagattactg
ccaggtccccctcatcgattgaaagtgaaacctgattctgaaattttagttatagaaaat
ggaacagctttcccatttcaggtagaagttttggatgaatcagacaatataacagcacaa
ccaaaattgattgttcattgtaagttttcaggtgctccaaaccttccactctatgttgtg
gattgcagtagttctggaaccagtattttgtcaggaccagcaattcaagttcagaatatc
aaaaaagaccagacgcttaaagcaaaaattgaaatacctagttgtaaagatgtggcacct
gtggagaagactattaagttgcttcccagtagccatgttgcaagattacagatattcagt
gtagaaggacaaaaggcaatccagatcaaacatcaggatgaggttaattggatagcagga
gatactatgcataaccttatttttcaaatgtatgatgaaggagaaagggaaatccatata
acatcagctttagcagagaaaattaaagttaactggactcctgagattaacaaagagcac
ttactacagggtctgcttcctgatgtacaagtaccaacatctgtaaaagatatgcgctat
tgccaggtttcgttccaagatgatcatgtgtctttggaaagtgcatttacagtaagacca
cttcctgatgaacctaaacatctaaaatgtgaattaaaaggaggaaaaactgtacagatg
ggccaagagcttcaaggagaaatagttataatagttacagatcagtatggaaatcagatt
caagcattttcaccaagttctctatcttccttgggaattgctgggattggacttgatagc
tcacatttgaaaactacttttcaggaaaatacacaaagtataagtgtgagaggcatcaaa
tttattccaggtccccctggaaataaggatctttgttttacgtggcgtgagttttctgac
tttattcgagtgcagctaatttctgggccaccagctaaacttctcattgtagactggcca
gagttaaaggagtccattccagtgattaacggaagagaattacagaatcctctcattgtt
caactttgtgatcagtgggataatccagcacttgtgccacaggttaaaataagccttata
aaagctaacaatttaaagctcactccttcaaaccaacagcataaaaccgatgaaaggggc
agggctaatttgggagtgttcagtgtttatgcccctagaggagaacatattatgcaggtt
aaagccatttataacaagaataccatagaaggacctataattaagttaatgattcttcca
gaccctgaaaaacccattcgtctcaatgttaaatatgacaaagatgcttcctttttagca
gggggtattttcactgattttatgattactgttatttctgaagatgacagtatcattaaa
aatattaatccagcacgtatttccatgaaaatgtggaaactgtcaaacagtgggaaccga
ccaccagcaaatgcagaaatatttagttgtaataaaataaaggataatgacaaggaagat
ggctgcttctacttcagggataaagcaattcctaacaaagtggggacatattgtatccag
tttggttttatgatggataaagcaaatatccttaacagtgagcagattatagtggatgtt
ctacctaatcaacctgtgaagttagttcctgaaattcagccagctacaccagctgtttca
aatgttcgttcagttgccagtaggaccttggtcaaagatttatatcttcgtatcacggat
ggctacaacaatcatactggaattgatttggttggcactgtaatggctaccatcaaaggc
tctaatgaggaagatgacaccccactctttattgggaaagttagaacacttgaatttccc
tttgtgaaaggttcagctgaaatcacgagtctagttctggcagaaaatagtcctggaagg
gatagcactgagtattttattgtgtttgagcctcggctaccaggtttatcaagaacatta
gaatcatatatcctaccatttatgttttacaatgatgttaagaagcagcaacaaatggca
gcacttacaaaagaaaaggaccaattatctaagtctattataatgtatagaagtttattt
gatgccagcaaacagcttcttgatgagatgaagtgccaagttgaagaagcaaaattaaaa
gaggcccagttgcgaaatgaactaaaaacacacaatattgacattcctacaacacaacag
atgccacacattgaagcacttttgaagaataagatgtcagaacaggaagaactaaagaaa
aaacccagaagatcatgtactcttccaaactatactaaaggcagtggagatgttttagga
aagattgcgcacctggcacaaattgaagatgatagagccgcaatggttatttcttggcat
ctggcaagtgacatggactgtgtggtcaccctgaccactgatgctgcacgtcgtatctat
gatgaaacccaaggtcgtcagcaggtgttgccccttgattctatttataagaagactctt
ccagattggaaaagacctctgcctcattaccgaaatggaaaattgtattttaaacccatt
ggagatcctgtctttgcccgagatttgttaacatttccagataacgtagaacattgtgaa
acagtgtttggtatgctgttaggagacaccattattttggataatttggatgctgctaat
cattatagaaaagaggttgttaaaattacatactgtcctacactgctgaccagagatgga
gatcgcattcgaagtaatggaaagtttgggggccttcagaataaagctcctccaatggat
aaacttcggggaatggtctttggagctccagtaccaaaacagtgcctgatcttaggggaa
caaatagatcttcttcagcagtaccgcactgctgtgtgcaggttgggcactgtgaacaag
gaccttaacgggcagttggaataccttcacactccggatatgaagaagaaaaaacaggaa
cttgatgaacaagagaagaatctcaaactgatagagcaaaaactaggtatgactcccaca
cgtaagtgtaatgactcactgcgtcatccaatgacagactgtccagttcctcctaagaga
atgagaagagaagttacaagacaaaataggattataaccaaaacagatgtgtga
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integrated database retrieval system
