Globicephala melas (long-finned pilot whale): 115855252
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Entry
115855252 CDS
T11080
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X2
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
gmf Globicephala melas (long-finned pilot whale)
Pathway
gmf03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
115855252 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gmf03000
]
115855252 (KDM2B)
04121 Ubiquitin system [BR:
gmf04121
]
115855252 (KDM2B)
03036 Chromosome and associated proteins [BR:
gmf03036
]
115855252 (KDM2B)
Enzymes [BR:
gmf01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
115855252 (KDM2B)
Transcription factors [BR:
gmf03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
115855252 (KDM2B)
Ubiquitin system [BR:
gmf04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
115855252 (KDM2B)
Chromosome and associated proteins [BR:
gmf03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
115855252 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
115855252 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
DUF7885
Cupin_8
JmjC
AppA_SCHIC
Motif
Other DBs
NCBI-GeneID:
115855252
NCBI-ProteinID:
XP_030716126
LinkDB
All DBs
Position
13:complement(81842705..81964987)
Genome browser
AA seq
1308 aa
AA seq
DB search
MEAEKDSGRRLRPIDRQRYDENEDLSDVEEIVSVRGFSLEEKLRSQLYQGDFVHAMEGKD
FNYEYVQREALRVPLIFREKDGLGIKMPDPDFTVRDVKLLVGSRRLVDVMDVNTQKGTEM
SMSQFVRYYETPEAQRDKLYNVISLEFSHTKLEHLVKRPTVVDLVDWVDNMWPQHLKEKQ
TEATNAIAEMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIPPTLHNL
ALYEEWVLSGKQSDIFLGDRVERCQRIELKQGYTFFIPSGWIHAVYTPVDSLVFGGNILH
SFNVPMQLRIYEIEDRTRVQPKFRYPFYYEMCWYVLERYVYCVTQRSYLTQEYQRESMLI
DAPRKPSIDGFSSDSWLEMEEESCEQQPQEEEKEGEGEEEEEGADKTPKAPTDGPASPSS
TPSEDPEAPGKKPKAPAMRFLKRTLSNESEDSVKSTTVPIDYPKTPTGSPATEVSAKWTH
LTEFELKGLKALVEKLESLPENKKCVPEGIEDPQALLEGVKNVLKEHADDDPSLAITGVP
VVTWPKKTPKNRAVGRPKGKLGPASAVKLAANRTTAGARRRRTRCRKCEACLRTECGECH
FCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEEGKFNLMLMEC
SICNEIIHPGCLKIKESEGVVNDELPNCWECPKCNHAGKTGKQKRGPGFKYASNLPGSLL
KEQKMNRDSKEGQEPAKRRSECEEAPRRRPDEHPKKVPPDGILRRKSDDVHLRRKRKYEK
PQELSGRKRASTLQTSPGSSSHLSPRPPLGSSLSPWWRSSLTYFQQQLKPGKEDKLFRKK
RRSWKNAEDRMALANKPLRRFKQEPEDDLPEAPPKTRESDHSRSSSPTAGPSTEGAEGPE
EKRKVKMRRKRRLPNKELSKELSKELNQEIQKTESSLAHENHQPIKSEPESENEEPKRPL
GLCERPHRFSKGPNGTPRELRHQLGPSLRSPPRVISRPPPSVSPPKCIQMERHVIRPPPI
SPPPDSLPLDDGAAHVMHREVWMAVFSYLSHQDLCVCMRVCRTWNRWCCDKRLWTRIDLN
HCKSITPLMLSGIIRRQPVSLDLSWTNISKKQLSWLINRLPGLRDLVLSGCSWIAVSALC
SSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQMDNRSKLRNIVELRLAGLDITDA
SLRLIIRHMPLLSKLHLSYCNHVTDQSINLLTAVGTTTRDSLTEINLSDCNKVTDQCLSF
FKRCGNICHIDLRYCKQVTKEGCEQFIAEMSVSVQFGQVEEKLLQKLS
NT seq
3927 nt
NT seq
+upstream
nt +downstream
nt
atggaggcagagaaagactctggaagaagattgcgcccgattgaccgccagagatacgac
gagaacgaggacttgtcggacgtggaggagatcgtcagcgtccgcggcttcagcctggag
gagaagctgcgcagccagctgtaccagggggacttcgtgcacgccatggagggcaaagat
ttcaactatgagtacgtgcagagagaagctctcagagttcccctgatatttcgagaaaag
gatggcctgggaattaagatgcctgaccctgatttcacagtccgagatgtcaaactccta
gtgggtagccggcggctggtggatgtgatggacgtgaacacccagaaaggcacggagatg
agcatgtcccagtttgtgcggtactatgagacgcccgaggcccagcgggacaagctgtac
aacgtcatcagccttgagttcagccacaccaagctggagcacttggtcaagcgtcccacc
gtggtagacctggtggactgggtggataacatgtggccccagcacttgaaggagaagcag
acggaagccacgaatgccattgcagagatgaagtacccgaaagtgaagaagtactgtctg
atgagcgtgaaaggttgtttcactgacttccacatcgacttcggaggcacttccgtttgg
taccatgttttccggggtgggaagatcttttggctgattcctccaaccttgcacaatttg
gcactgtacgaggagtgggtgctgtcgggcaaacagagcgacatcttcctgggagaccgt
gtggagcgatgccaaagaattgagctgaaacagggttacacattcttcatcccttccggc
tggatccatgcagtctacacccccgtagactctctggtgttcggcggaaacattctgcac
agcttcaacgtgcccatgcagctgcggatctacgagatcgaggacagaacgcgggtgcag
cccaaattccgttaccccttctactatgagatgtgctggtatgtcttggagagatacgtg
tactgtgtgacccagcggtcctacctcactcaggaataccagagagaatcaatgcttatt
gatgccccaagaaaacccagcatagacggcttctcatctgattcctggctggagatggag
gaggagtcctgtgagcagcagccccaggaggaggagaaggagggggagggggaggaagag
gaggagggtgcagataagacgcccaaagctcccaccgatggccctgcctcgcccagcagc
accccctccgaggacccggaggcccccgggaagaagcccaaagcccctgccatgcggttc
ctcaaaaggactttgtcgaatgagtcagaagacagcgtgaagtccaccacggtgcccata
gactaccccaagacgcccaccggctctcccgccaccgaggtctctgccaaatggacccac
ctcactgagtttgaactgaagggcctgaaagctctggtggagaaacttgaatccctcccg
gagaacaagaagtgtgttcctgagggcatcgaggacccccaggcactcctggagggtgtg
aagaatgtcctgaaggagcacgcggatgacgaccccagtctggccatcactggggttccc
gtagtcacttggccaaagaagactccaaagaaccgggctgtaggtcggcccaaggggaag
ctgggccctgcctctgcggtgaagttggccgccaaccggaccacggcgggagctcgccgg
cgccggacgcgatgccgcaagtgcgaggcctgcctgcggacggagtgtggagagtgccat
ttctgcaaggacatgaagaagttcgggggccccgggcggatgaagcagagctgcatcatg
cggcagtgcatcgcgccagtgctgccccacaccgccgtgtgtctagtgtgtggcgaggca
ggaaaagaggacacagtggaagaggaagaaggcaagtttaacctcatgctcatggagtgc
tccatctgcaacgaaatcatccaccctggatgccttaagattaaggagtcagagggcgtg
gtcaacgatgagcttccaaactgctgggagtgtccaaagtgtaaccacgccggcaagacc
gggaaacaaaagcgtggccctggctttaagtatgcctcaaacctgcccggctccctgctc
aaggagcagaagatgaaccgggacagcaaggaggggcaggagcctgccaagcggaggagt
gagtgtgaagaggcgccccggcgcaggccagacgagcaccccaagaaggtgccccctgac
ggcatcctgcgccgaaagtcagacgatgtgcacctgaggaggaagcggaaatacgagaag
ccccaggagctgagtggacgcaagcgagcctcgacgcttcaaacgtcccccggttcctcc
tctcacctctcgccgaggccccctctaggcagcagcctcagcccctggtggagatccagt
ctcacttacttccagcagcagctaaaacccggcaaagaagataagcttttcaggaaaaag
cggcggtcctggaagaacgctgaggaccgaatggctctggccaacaagcctctcaggcgc
ttcaagcaggagccagaggatgacttgcccgaggcgccccccaagacaagggagagcgac
cactcccgctccagctcccccaccgccggccccagcacggagggggcggagggccccgag
gagaagaggaaggtgaagatgcgccggaagcgtcgactccccaacaaggagctgagcaag
gagctgagcaaggagctcaaccaggagatccagaagacggagagcagcctggcccacgag
aaccaccagcccatcaagtcggagcctgagagcgagaacgaggagcccaagcggcccctg
ggcctctgtgagcgccctcaccgcttcagcaaggggcccaacggcaccccccgggagctg
cggcaccagctggggcccagcctgcgcagcccgccccgagtcatctcccggccccctccc
tccgtgtccccgcccaagtgcatccagatggagcgacatgtgatccggccgccccccatc
agccccccgcccgactcgctgcccctggatgatggggcagcccacgttatgcacagggag
gtgtggatggccgtcttcagctacctcagccaccaagacctgtgtgtctgcatgcgggtc
tgcaggacctggaaccgctggtgctgtgataagcggttatggacccgcatcgacctgaac
cactgcaagtccatcacacccctgatgctgagcggcatcatccggcgacagcctgtctcc
ctggacctcagctggaccaatatctccaagaaacagctgagctggctcatcaaccgcttg
cctgggctccgagacctggtgctgtcaggctgctcatggatcgcagtctcagccctctgt
agctccagttgtccgctgctccggaccctggatgtccagtgggtagaaggactaaaggac
gcccagatgcgggatctcctgtccccgcctacagataacaggccaggtcagatggacaat
cggagtaagctccggaacattgtggagctgcgtctggccggtctggacatcacagacgcc
tccctgcggcttatcattcgccacatgcccctgctctccaagctccaccttagttactgt
aaccatgtgactgaccagtccatcaacctgctcaccgctgtgggcaccaccacccgagac
tccttaaccgaaatcaacctgtcagactgcaataaggtcactgaccagtgcctgtccttc
ttcaaacgatgtgggaatatctgtcatattgacctgaggtactgcaagcaagttaccaag
gaaggctgtgagcagttcatagccgaaatgtctgttagtgtccagttcgggcaagtggaa
gaaaaactcctgcaaaaactgagttag
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