Gadus morhua (Atlantic cod): 115530630
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Entry
115530630 CDS
T10832
Symbol
brca1
Name
(RefSeq) breast cancer type 1 susceptibility protein isoform X1
KO
K10605
breast cancer type 1 susceptibility protein [EC:
2.3.2.27
]
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh03440
Homologous recombination
gmh03460
Fanconi anemia pathway
gmh04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
115530630 (brca1)
09124 Replication and repair
03440 Homologous recombination
115530630 (brca1)
03460 Fanconi anemia pathway
115530630 (brca1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
gmh01009
]
115530630 (brca1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gmh04121
]
115530630 (brca1)
03036 Chromosome and associated proteins [BR:
gmh03036
]
115530630 (brca1)
03400 DNA repair and recombination proteins [BR:
gmh03400
]
115530630 (brca1)
Enzymes [BR:
gmh01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
115530630 (brca1)
Protein phosphatases and associated proteins [BR:
gmh01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
115530630 (brca1)
Ubiquitin system [BR:
gmh04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
115530630 (brca1)
Multi subunit type E3
BRCC complex
115530630 (brca1)
Chromosome and associated proteins [BR:
gmh03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
115530630 (brca1)
DNA repair and recombination proteins [BR:
gmh03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
115530630 (brca1)
BRCA1-A complex
115530630 (brca1)
BRCA1-B complex
115530630 (brca1)
BRCA1-C complex
115530630 (brca1)
BRCA complex
115530630 (brca1)
FA (Fanconi anemia) pathway
Downstream FA components
115530630 (brca1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-C3HC4
BRCT_2
zf-C3HC4_4
zf-C3HC4_2
zf-C3HC4_3
zf-RING_UBOX
zf-RING_2
RING_XB3-XBAT31
zf-Nse
zf-RING_5
zf-RING_10
zf-RING_4
zf-MIZ
RTT107_BRCT_5
PTCB-BRCT
zf-ANAPC11
U-box
zf-rbx1
TRAF3_RING
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
115530630
NCBI-ProteinID:
XP_030195150
Ensembl:
ENSGMOG00000029005
LinkDB
All DBs
Position
18:18282242..18310198
Genome browser
AA seq
1554 aa
AA seq
DB search
MKSPRAEDVRRGISALWDTLQCPICLELMTTPVSTKCDHQFCKFCMQKLLEGTKKREANC
PVCKTKVTKRSLQESPGFQRLITGLQNMIEAYENDTKTNYFTGLTLQRRRSQSMTETEGS
TFLSGNAPDNHHDNGDSEEHGLSGTHSSTVEANNGFASLMDLEDSNCLMVINDGLDTSFS
ETPQTSGEKGYIRVGISPTVEPVEKQEMAEVVEKATSRPRTRGKKRLAQLEYPPSRLALV
ADDVMQQQAPKDDAEKETGKTQKIQRQARKSVEKVSQWLLQVPLTENLGSVVHPDPTSDP
KGPPTSPGGSISSTSTKILRREKPEGDHKTEEQVGLRRAEPEADQKTEDQVKSLEDQVFG
IVYTRRGKRSFSPPQQRLQLIPHDPPPVTEEYNPHADAGESHQPIPGDYETKSNFEAEDG
GVEAAEGVVEIPPQVSNHQSSVTDNDFSKEPRALDLSGRSRLAAPQSEEPPPQEGEETDE
EGEASSLAFNRAVLKLERKSANRTGHAMQDIDADLNIETAEKLETSPKRRPGLRKGVKRQ
NRISARGTKPLVLVGALGGEAVPERPQSRMGCGEEHVQIETYPSSEEVGATVGRTTRSRR
SLHIAKEVPGSCAGKRPSKRAICTRGQTFIEPGPDKDNLVHPPAKTKIIILDEGNQTGVN
VTQKNGCICKDDIGGIEKTGSVEGSVAPLSQTKVLTQMNGSIVEVPNTTSPCEARSPSIV
QIDTACRSPAVAVVPSPAPKSIMAANQNGACTEDSPCLIKCVEREEDEDMSDSEVDTEQL
MKSFKVAKRKSFHLGSPKGTRSSLRSNKSTQISKTVDDSVPGIECITDQIPKSTEKSATE
PSEKQPEMEKSSCGDMVASSYSPRRNTSLSGIRPRGLRRRLVQSEEALKSDNVSLTKCPD
SGVGCLSGNTASSTLSPNKAAKSLRCTVTPDASESVLLFSALEVTEDGSLGVTSRSKKRL
QTANKPKQPTKRKLDAVTLPKTTPCNSTAMSATQGNTDNSVEVLVNTNGSITPDGLEPQV
VESSDKEPECSGLSAGSPIKKNPMRKAHRLESSSDEEIPTLAEIFKCHPPAVQCNGLEGP
AEAQNGPQRGSGCEEPNVLATPLANPAVCPPSPDFVEFSQASVDLFDTPAECDIAAIDNG
VSMDSSQFSSDLLVTQQRQAMQKELLRLGNLMALVTEVLQEKEEGSGTELPADQPLTGTA
VESELPADQPTTGEDLSMPCALEVKQAARDRAPIKTRHSISPHSPVANHVASPAPGLLRP
DETAATVPQSAMATRPSTRLSGDTRTPSSQGSKVKWTENKTKPPPRLKNEETATEDQVTR
RVSETEPPDATTPKPECVFVMSGLGSSEQVMVRKFAKRIGARVVPQVTPEVTHVIMCTDE
DLVCERTLKYFLGIAGRKWVLSFLWISECFKQGDLLDESAFEVRGDVVNGAVHHGPLRAR
STGDQDLLMKGYKICFQGSFTDMTKDQMEWMVELCGAAVVKDPLQFDSKKDLIIPMHHLF
LLQYCHQLLIVQPGTETALTKPSASYGRATVVNRGWLLDSVATYTLQNTDDYRA
NT seq
4665 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagccccagagcagaggacgtcaggagaggtatatcagcactctgggatacactg
cagtgtcctatatgccttgaactgatgaccacaccagtgtcgactaaatgtgaccatcag
ttttgcaagttctgcatgcagaagcttctcgaaggtaccaaaaagagagaggcaaactgc
ccggtttgcaaaaccaaggtcactaaaaggagtttacaggagagccctgggttccagcga
ttaataacaggtttacaaaatatgattgaagcctatgaaaatgacaccaagaccaactac
ttcacaggattgaccctgcagaggagaaggtcacagagcatgacggaaacagaaggaagc
acgtttttatctggaaacgcacccgataatcaccatgacaacggagatagtgaggaacac
ggtctttcagggactcactcctccaccgtagaagccaacaatggatttgccagcctcatg
gatttagaagattccaactgtttgatggtgataaatgacggcttggatactagcttcagt
gaaacgccacagacttcaggagaaaaggggtacatccgtgtgggaatcagccctaccgta
gagccagtagagaaacaagaaatggccgaagtggtggaaaaagcaacatcaagaccccgg
acgaggggcaagaagcgcctcgcccagctggagtacccgccatcccgcctcgcattggtt
gctgatgatgtcatgcaacagcaagcaccaaaagacgatgcagagaaggaaaccggaaaa
acccaaaagatccagcgtcaggcgaggaaaagtgtggagaaggtctcccagtggctccta
caagttcctctcacggagaatctggggtcggtggtacacccggaccccacctctgatcca
aaaggccctcctacttcccccggagggagcatctcgtcgacctctacaaagatcctcagg
cgagaaaagcctgagggcgaccataagaccgaagagcaggtcggcctcaggcgagccgag
cctgaggccgaccagaagaccgaagatcaggtcaaaagtctagaagaccaagtgttcggg
attgtttacactcgccgggggaagagatccttctctccaccacaacaacgccttcaactc
atccctcatgacccaccaccggtgactgaagaatacaatcctcacgctgacgctggagag
agccaccaacccattccaggtgattatgaaaccaaatccaactttgaggctgaagatggc
ggtgttgaggctgctgaaggtgttgtggagatcccaccgcaggtgtcaaaccatcaatcc
agtgttacagacaatgatttttctaaagaaccgagagccttggacctcagtgggaggagc
cgattggcggctcctcaatcggaggagccgccaccacaggaaggagaagaaacagatgag
gaaggagaagccagcagtttggcgttcaacagggctgtgctcaagttggagagaaaatcc
gctaatcgaacaggccacgcgatgcaggacattgatgctgaccttaatatagaaactgca
gagaaactggaaacttcccctaagaggagacctgggctgaggaaaggtgtcaaacggcaa
aacagaatatcggcaagagggacaaaaccactggttctagtcggcgctctaggaggagaa
gccgttccagagagaccccagagcaggatggggtgtggagaagaacatgttcaaattgag
acttacccgagcagcgaggaggtgggtgccacagtaggcaggaccactcgcagtagaaga
tccctgcatattgccaaggaagttccgggtagttgtgctggaaagcgtcctagcaagagg
gcgatatgtacaagaggacagacatttatagaacctggcccagataaagataatctggtt
catccacctgcgaaaactaaaattattatattagatgaagggaatcaaacgggggtaaat
gtcacccaaaaaaacggatgtatctgcaaagacgatatcggaggaattgagaaaactgga
tctgttgagggttccgtggctcctttgagccagactaaagttttgacccaaatgaatggc
tctatagttgaagttcctaataccacaagtccttgtgaggcgaggtcaccctccatcgta
caaatagatacagcttgtagaagtcccgctgtggcagtagtaccaagccctgcccctaag
agtatcatggcagccaatcagaacggtgcatgtactgaagattccccctgtctgatcaaa
tgtgttgagagggaggaagacgaggatatgagcgatagtgaggtcgacactgaacagctg
atgaagagcttcaaagtggctaaaagaaagtccttccatcttggcagcccaaagggaacc
agaagcagtcttaggtcgaacaaaagcactcaaatttctaagacggtagatgactctgtt
ccaggaattgaatgcataacagatcagattcccaagtccacagaaaaatctgcaacggaa
ccatcggaaaagcagccagagatggaaaaatcctcttgtggcgatatggttgcctcttct
tattcaccaagacgaaacacaagcttgtcagggataagacctcgaggcttgaggaggcgt
cttgtccagtcagaggaagcattgaagtcggacaatgtgtccttaaccaagtgcccggat
agtggtgtaggctgtctctccgggaacacggcttctagtaccctcagccctaataaagct
gcaaaaagtctgcgttgcaccgttacccctgatgcatctgagtcagtcctgctcttcagt
gcgctggaagtaactgaagacggctctcttggcgtgacctccagaagtaaaaagcgtctg
caaactgccaacaaacccaagcagcctaccaagagaaaacttgatgcagtaaccctgccc
aaaacaacaccatgcaattccactgccatgtcggccacgcaaggtaatacggacaacagc
gtggaagtactagtcaataccaatggctccataacccctgacggactcgagccacaagtg
gttgagtcttctgacaaagagccggaatgcagcggcctgagtgccggttcccccatcaag
aagaaccctatgaggaaggctcacaggctagagtcttcatcagatgaggagatacctact
ctagcagagatttttaaatgtcatcctcccgcggtccagtgtaatggtcttgaaggcccg
gccgaggctcagaatggcccacagagggggtctgggtgtgaggagcccaacgttttggcc
acgccgctggccaacccagccgtgtgccctcccagcccagactttgtggagttcagccag
gcctctgtggatctctttgacacacccgctgaatgtgacatcgctgcaattgataacggc
gtttcgatggactcatcacaattctccagcgatctacttgtcacccagcaaaggcaggcc
atgcagaaggagctgctgcggctggggaacctgatggcgctggtcacagaggtgctgcag
gagaaggaggaggggtccggcacagagctccctgcagaccagccgctcacgggtaccgcc
gtcgagtcagagctccctgcggaccagcccaccacaggtgaagacctctctatgccatgt
gccctggaagtaaagcaggccgcaagagaccgtgctccaatcaagacaagacattccatc
agtccacacagtccagtagccaatcatgttgcatcaccagcgcccggcctgttgaggccc
gatgaaactgcagctacagtgccacagagcgccatggcaacgaggcccagcacccgactc
agtggtgacacccggacacccagctcacaagggtcaaaggtcaaatggacagaaaacaaa
accaaaccaccaccgcgcctgaaaaacgaggagaccgccactgaagaccaggtgacgagg
cgggtgtctgagacggagccccctgacgcgaccacgcccaaaccagagtgtgtgttcgtg
atgtccggcctggggtccagcgaacaggtgatggtgaggaagttcgccaagaggatcggg
gctcgcgtcgttccccaggtgacccctgaggtgacccatgtcatcatgtgcacagatgag
gacctggtgtgtgagcgtaccttgaagtacttcctgggcatcgcaggcaggaagtgggtg
ttgagtttcctgtggatctcggagtgcttcaaacagggggatctgctagacgagagtgcg
tttgaggtgcggggagacgtggtgaacggggccgtccaccacgggcccctcagggcccgc
agcactggggaccaagacctcctcatgaagggctacaagatctgcttccaggggtccttc
acggacatgaccaaagaccaaatggagtggatggtggagctatgtggtgctgctgttgtg
aaagaccctctgcagttcgacagtaaaaaggatttgattatccccatgcatcatctcttc
ctcctccagtactgccaccagctgcttattgtacagccaggaacggagacggcgctaacc
aaacccagcgcctcttatgggagagcgacagttgtgaaccgtggttggctgttggactcg
gtggcgacctacaccctccagaacactgacgactacagggcctga
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integrated database retrieval system
