Gadus morhua (Atlantic cod): 115533518
Help
Entry
115533518 CDS
T10832
Symbol
eftud2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115533518 (eftud2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gmh03041
]
115533518 (eftud2)
Spliceosome [BR:
gmh03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
115533518 (eftud2)
Complex C
U5 SnRNP specific factors
115533518 (eftud2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
115533518
NCBI-ProteinID:
XP_030199923
Ensembl:
ENSGMOG00000014277
UniProt:
A0A8C5BWQ4
LinkDB
All DBs
Position
2:13283348..13298902
Genome browser
AA seq
971 aa
AA seq
DB search
MEADLYDEFGNYIGPELDSDDDDDIEADDRDVDEPDDDEDEDEPADAEDDVPGMEVVLHE
DKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKNKQFTLMEQELPQTVYDMEFLAD
LMDSPELIRNITLCGHLHHGKTCFVDCLIEQTHPEIRKRDDVDLRYTDILFTEQERGVGI
KSTPVTMVLPDSRGKSYLFNIMDTPGHVNFSDEVTTGIRISDGIVLFIDAAEGVMLNTER
LIKHAVQERLAITVCINKIDRLIVELKLPPTDAYYKLRHIVDEVNGLLSTYSTDENLVIS
PLLGNVCFASSQYSTCFTLGSFAKIYSDTYGDVNYNDFAKRLWGDIYFNPKTRKFTKKAP
TSNSQRSFVEFVLEPLYKILSQVVGDVDTSLPRVLDELGIHLTKEELKLNIRPLLRLVCN
RFFGEFTGLVDMCIQHIPSPQEGARAKIEHSYAGSLDSDLGEAMLECDPDGPLMCHTTKM
YSTEDGVQFHAFGRVLSGTIQAGQPVKVLGENYTLEDEEDSQVCTLGRLWISVARYQIEV
NRVPAGNWVLIEGCDQPIVKTATITEPRGNEEAQIFRPLKFNTASVIKIAVEPVNPSELP
KMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVT
FCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTK
YDWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCD
EPIRNVKFKILDAVIAQEPLHRGGGQVIPTARRVVYSAFLMATPRLMEPYYFVEVQAPAD
CVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFALSVF
HHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLEL
AKQDVVLNYPM
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atggaggcggatctatacgacgagtttggtaactatatcggtccggagctggattctgat
gatgacgatgatattgaggcagacgacagggatgtggatgagcccgatgatgatgaagac
gaagatgagccggctgatgctgaagatgacgttcctgggatggaggtggtcctgcacgag
gataaaaagtattatcctacagcggaagaagtctatgggccagaggtggagaccatcgtc
caggaggaagatacccaacctctcacagagcccatcatcaaacctgtgaagaataagcag
ttcactctgatggaacaggagctaccacagactgtttatgacatggaatttctcgctgac
ctgatggacagtccagagctgattcgtaatatcaccctctgcggccatctgcaccatggc
aagacttgtttcgttgactgtctgatcgaacaaactcacccagagatcaggaagagggac
gacgtggatcttcgatacacggatatcctgttcaccgaacaagagaggggcgttggtatc
aaaagtacccctgtcactatggtgctgccggactccagaggcaaatcctacctgttcaac
atcatggacacgccaggtcatgtcaacttctcagatgaggtgacgaccggaatccgcatc
tcggacggaatcgtcctcttcatcgatgcagccgagggagtgatgctgaacacagaacgt
ctgatcaagcatgccgtacaagagcgtctggccatcaccgtctgcatcaacaagatcgac
cgcctcattgtggaactcaagctgccacccacagacgcctattacaagctgaggcacatc
gtggacgaggtcaacggcctgcttagcacatactctacggatgagaacctggtgatctct
cctctcttggggaatgtgtgtttcgccagctcccagtactctacctgcttcacccttggc
tccttcgccaagatctactcagacacttacggtgacgtcaactacaacgactttgccaag
agactctggggagacatctacttcaaccctaagacgcggaagtttaccaagaaggcccca
accagtaactcccagcgtagctttgtggagtttgttctggagcccctctacaagatcctt
tcacaggtggtgggagacgtggacacctccctgcccagggtgctggatgagctgggcatc
cacctcaccaaggaggagctgaagctcaacatcagacccctgctgaggctggtctgcaac
cgcttcttcggagagttcacgggcttggtggacatgtgcatacagcacatcccgtcgcca
caggagggcgcaagagcaaagatagagcacagctacgccggtagtctggactcggacctg
ggggaggccatgttggagtgtgaccctgacggccctctgatgtgccacaccaccaagatg
tacagcacggaggacggcgtgcagttccatgccttcggccgtgtgctgagcggcaccatc
caggcgggccagcccgtcaaggtgctgggggagaactacaccctggaggacgaggaggac
tcccaggtctgcaccctggggcgcctctggatttctgtggccaggtaccagatagaggtg
aaccgagtgcctgctgggaactgggtgctcatcgaaggctgtgaccagcccattgtcaag
accgccaccatcacagagcccagaggcaacgaagaggcccagatcttcaggccgctgaag
ttcaacactgcatcggtgatcaagatcgccgttgagcccgtcaacccgtcggaactgccc
aagatgctggacggactccggaaggtcaacaagagctacccgtctctgaccacaaaggtg
gaagagtctggagaacatgtcattctggggacaggagagctgtacctggactgtgtaatg
cacgacctgcgcaagatgtactcggagattgacatcaaggttgctgaccccgttgtgacc
ttctgtgaaacggtggtggagacgtcgtcgctgaagtgttttgctgaaacgcccaacaag
aagaacaagataacgatgatcgcagagcccctggagaagggcctggcggaggacatagag
aacgaagtggtgcagatcacctggaacaggaagaagcttggcgagttcttccagaccaag
tacgactgggatctgctggccgccaggtccatctgggccttcggccccgacaccactggg
cccaacatcctggtggacgacaccctgccgtctgaggttgacaaggcgttgctgggctcc
gtcaaagacagcatcgttcagggcttccagtgggggaccagggagggcccgctgtgtgat
gagcccatcaggaacgtgaagttcaaaatcctggatgccgtgatcgcccaggagcctctg
caccgaggggggggtcaggtcatccccaccgccaggagggtggtgtactccgccttcctc
atggcaacccccaggttgatggagccctactactttgtggaggtgcaggctccagccgac
tgcgtctctgctgtgtacacggtgctggcccggagaagaggacatgtgacccaggacgct
ccgatccccggctcccccctctacaccatcaaggccttcatcccggccatcgactcgttt
ggcttcgagacggacctccgcacgcatacacagggacaggccttcgccctgtcggtgttc
catcactggcagattgtgcccggtgaccccctggacaagagcattgttatcaggccgctg
gagccccagcccgcccctcatctggccagagagttcatgatcaagacgcgtaggcgcaag
ggcctgagcgaggatgtgagcatcagcaagttcttcgacgatcctatgttgttggagctg
gccaagcaggacgtggtgctcaactatccaatgtga
DBGET
integrated database retrieval system
