Gadus morhua (Atlantic cod): 115541073
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Entry
115541073 CDS
T10832
Name
(RefSeq) low-density lipoprotein receptor-like
KO
K12473
low-density lipoprotein receptor
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh03272
Virion - Hepatitis viruses
gmh04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03272 Virion - Hepatitis viruses
115541073
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
115541073
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gmh04131
]
115541073
Membrane trafficking [BR:
gmh04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
115541073
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
cEGF
EGF_CA
SGL
EGF
Vgb_lyase
DUF5050
hEGF
EGF_3
Psg1
Motif
Other DBs
NCBI-GeneID:
115541073
NCBI-ProteinID:
XP_030208680
Ensembl:
ENSGMOG00000017252
LinkDB
All DBs
Position
3:complement(12189976..12206585)
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AA seq
874 aa
AA seq
DB search
MRTWSGVSVSPCCLLLLLHCLAVSDAAAGCNSAQFTCGNGRCVTTRWICDGSDDCGDGSD
ELNSTCAAKACLPSEFSCGNPRNQCISERWKCDGAADCDNGEDEKGCAAKTCSAGEFRCG
SGHCVSASFVCDREHDCEDGSDEDGCPLPSCSAGSFQCNNTVCVPALWACDGDGDCIDGS
DEWPQSCAGRGPAERKSAACGPQQFLCGSGECVHSSWRCDGGADCRDHSDEDNCTDPTCQ
PDEFQCNDGLCIRGDLQCDGVEDCRDVSDEMGCSQVNVCEGPSLFKCRSGECVSMEKVCD
KTSDCSDSSDEPASDCDKNECEKGNNGGCSHTCVNLKLGYNCTCPVGYRLSMDKHLCVDI
NECSTPDICTQICVNLPGSYKCDCKEGYAVDPVTRTCKARSGIVPYLFFTNKHDVRKMAV
DRTDYVRLMSGLKNVVALDLDIPSNTLFWSDLSLKKIYSTKISASGEEPAHRVVVDSDLT
SPEGLAVDWVHGNIYWTDSEQQTISVATVDGSKRKTLISTGLDRPRAIVVDPVQNFMYWT
DWGTEAKIEKSGLNGAGRIPLVTDNIVWPNGITLDMVNQRLYWVDSKMHTLSSVDVNGGT
RHTVMHDAHKLAHPISLDVFEDKVYWTDVNNNALYSANRHTGNDITELATDLDQPEDIVL
YHSLKQPMGTNWCREGNSMNGGCEFLCLPAPVINQRSAKYTCACPDHATLAPDMRKCVKG
MAVPPAPAKPITRPTPKATPQQPALPPTTTSINTRAAQRPASPSTTSPSSTPTAPPSLGS
AQVNNRYAAMPKPAESSHPGALLIVLPICVVCLLVFGGLFLWRQWRRKNTNTIHFDNPVY
QKTTEDEVHICTSDAGGYVYPQRQIVSAEEMDLA
NT seq
2625 nt
NT seq
+upstream
nt +downstream
nt
atgaggacgtggagtggggtcagtgtctctccgtgctgcctgttgctgctgcttcattgc
cttgctgtttcagatgctgcggcagggtgtaactccgcgcagttcacctgcgggaacggc
cgctgtgtgaccaccagatggatctgtgacggctcggacgactgcggcgacgggagcgac
gagctgaactccacctgtgctgccaaggcctgcctcccctccgagttcagctgcggcaac
ccccggaaccaatgcatctcggagcgctggaaatgcgacggagccgccgactgtgacaac
ggggaggatgagaagggctgtgcggccaagacgtgctccgccggtgagttccgctgcggc
agtggccactgcgtctccgcctccttcgtctgcgaccgcgagcacgactgcgaggacggc
tcggacgaggacggctgcccgctgccctcctgcagcgccgggtccttccagtgcaacaac
acggtgtgcgtgccggccctgtgggcctgcgacggcgacggcgactgcatcgacggctcg
gacgagtggccccagagctgcgcggggcgggggcccgccgagaggaagtccgcggcgtgc
gggccccagcagttcctctgcggcagcggcgagtgtgtccacagcagctggcggtgtgat
ggcggcgccgactgccgcgaccattcggacgaggacaactgcaccgaccctacctgccag
ccggacgagttccagtgtaacgacggcctctgtatccgtggcgacctccagtgtgacgga
gtggaggactgcagggacgtcagcgacgagatgggctgcagccaagtgaacgtgtgtgag
ggcccctccctgtttaagtgtcgcagcggggagtgtgtcagcatggagaaggtgtgtgac
aagaccagtgactgcagcgactcgtctgacgagcccgcgagcgattgcgacaaaaacgag
tgcgagaagggtaacaatggaggatgctcacacacgtgtgttaatctcaagctgggctac
aactgtacctgccctgttggctaccgcctcagtatggacaagcacctctgtgttgacatc
aatgagtgctccaccccagacatctgcactcagatctgcgtcaacctccctggtagctac
aagtgtgactgtaaggagggctatgcagtggatcctgtgaccaggacatgcaaggctcga
tcaggcatcgtcccctacctgttcttcaccaacaaacatgacgtgaggaagatggctgtg
gaccgcactgactacgtgcgcctgatgtcgggcctcaagaacgtggtggctctggacctg
gacatccccagcaacaccctcttctggtctgacctttctctgaagaagatatacagcacc
aagatcagcgcttcgggcgaggaacctgcccaccgcgtggtggtcgacagtgacctcacc
tcccccgagggcctggccgtggactgggtgcacgggaacatctactggacggacagcgag
cagcagaccatctccgtggcgacggtggacggcagcaagaggaagacgctgatctccaca
ggcctggaccggccacgcgccatcgtggtggaccccgtgcagaatttcatgtactggacc
gattggggaaccgaggccaaaattgaaaagagcggtttgaacggagccggccgcattccc
ttggtgacagacaatatcgtgtggcctaacggaatcactctggacatggtgaaccagcgt
ctgtactgggtggactccaagatgcacacgctgtccagcgtggacgtgaacggcgggacg
cggcacacggtcatgcacgacgcgcacaagctggcccaccccatctctctggacgtcttc
gaggataaagtctactggaccgatgtcaacaacaatgcactttacagtgccaaccgtcac
acaggaaatgacatcaccgagctggcgacggacttggaccagcccgaagacattgtcttg
taccacagcctcaagcagcccatgggtaccaactggtgcagagaggggaacagtatgaac
ggaggctgtgagttcctctgtcttcccgcccccgtgatcaaccagcgctccgctaagtac
acctgcgcctgtcccgaccacgccaccctggcccccgacatgaggaagtgtgtgaaaggc
atggctgttcctcctgctccagccaagcctataacaaggccgaccccgaaggcgacgcca
caacagcctgcccttccccccaccaccaccagtatcaataccagagctgcacagaggcct
gcctctccgtcaactacctccccctcctccacccccacagccccgccctctctcggctca
gctcaagtaaacaacagatatgctgctatgccgaagccggccgagtcttcacatcctggg
gcgctactcatcgtgctgccaatatgtgtggtgtgcctgctggtcttcggggggttgttt
ctatggcgacaatggcgcaggaagaacaccaacaccatccactttgacaacccggtgtac
cagaagaccacggaggacgaggtccacatctgcaccagcgatgccggcggctatgtctat
ccacagaggcaaattgttagcgcagaggaaatggacctagcataa
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