Gadus morhua (Atlantic cod): 115545430
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Entry
115545430 CDS
T10832
Symbol
tardbp
Name
(RefSeq) TAR DNA-binding protein 43 isoform X1
KO
K23600
TAR DNA-binding protein 43
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115545430 (tardbp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmh03019
]
115545430 (tardbp)
Messenger RNA biogenesis [BR:
gmh03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
115545430 (tardbp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TDP-43_C
TDP-43_N
RRM_1
RRM_7
RRM_PARP14_3
RRM_3
Motif
Other DBs
NCBI-GeneID:
115545430
NCBI-ProteinID:
XP_030214466
Ensembl:
ENSGMOG00000000526
LinkDB
All DBs
Position
1:30350756..30354558
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AA seq
395 aa
AA seq
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MSELYIRVAEDESEEPMEIPSEDDGTVLLSTVAAQFPGACGLRYRNPESQCMRGVRLVEG
VLHAPESDWGNLVYVVNYPKDNKRKMEEMDAASAVKIKRGSQKTSDLIVLGLPWKTSEQD
LKDYFATFGEVIMVQVKRDAKTGNSKGFGFVRFTEYETQTKVVSQRHMIDGRWCDCKLPN
SKAGPDEPMRSRKIFVGRCTEDMTTDELRQFFMQYGEVTDVFIPKPFRAFSFVTFADDQV
AQALCGEDLIIKGVSVHISNAEPKHNNSRQMMERGRFGAGGFGQGYGAGRGGMGGNSSGV
NFGAMGLNPAMVAAAQAALQSSWGMMGMLANQQGQTTAAGTATTARDPTYSSTSTSYSSP
TSASLGWAAGTNSASSSGFSSGFGAMESKSSSWGM
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atgtccgagttatacatccgagtggccgaggacgagagcgaggagcccatggaaatcccg
tcggaggacgacggcaccgtgctgctgtccacggtggcggcccagttccctggggcctgc
ggcctgcgctacaggaaccccgagtcgcagtgcatgcggggggtccgcctggtggagggg
gtcctgcacgccccggagagcgactgggggaacctggtctacgtcgtcaactaccccaaa
gacaacaaaaggaagatggaagaaatggacgccgcctccgctgttaaaatcaagaggggc
tcccagaagacgtcggatcttattgtgctggggctgccgtggaagacgtcagagcaggac
ctgaaggactactttgccaccttcggggaggtcatcatggtgcaggtcaagagggacgcc
aagaccggtaactccaagggctttgggttcgtccggttcacagagtacgagactcagacc
aaagtggtttctcagagacacatgatcgacgggagatggtgtgactgcaagcttcccaac
tctaaggctggtcctgacgagcccatgcggagccgtaagatctttgtggggcgctgcaca
gaagacatgaccactgacgagctccggcagttcttcatgcagtacggcgaggtcaccgac
gtcttcatccccaaacccttcagagccttctccttcgtcaccttcgccgatgaccaggtg
gcccaggccctgtgtggagaggacctgatcatcaagggcgtcagcgtgcacatctccaac
gccgagcctaaacacaataatagtaggcaaatgatggagcgtgggcggttcggggctggt
gggtttggccagggctacggcgcagggcgcggcggcatggggggcaatagcagcggggtt
aacttcggcgccatggggcttaacccggccatggtggcggcggcgcaggcagcgctgcag
agcagctgggggatgatgggcatgctggctaaccagcaggggcagaccacggcggcgggc
acggccaccacggcccgagaccccacctatagctccaccagcactagctacagtagcccc
acctcggccagcctgggctgggccgcgggcactaactccgcctccagcagcggcttcagc
tccggcttcggcgccatggagtcgaagtcctctagttggggaatgtag
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