Gadus morhua (Atlantic cod): 115546916
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Entry
115546916 CDS
T10832
Symbol
smg6
Name
(RefSeq) telomerase-binding protein EST1A
KO
K11124
protein SMG6 [EC:3.1.-.-]
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115546916 (smg6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmh03019
]
115546916 (smg6)
03032 DNA replication proteins [BR:
gmh03032
]
115546916 (smg6)
Messenger RNA biogenesis [BR:
gmh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
115546916 (smg6)
mRNA cycle factors
Common to processing body (P body) and stress granule
115546916 (smg6)
DNA replication proteins [BR:
gmh03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
115546916 (smg6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
PIN_4
EST1
TPR_12
Motif
Other DBs
NCBI-GeneID:
115546916
NCBI-ProteinID:
XP_030216605
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Position
7:complement(33868223..33884979)
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AA seq
810 aa
AA seq
DB search
MAQLRLELLSVYQQVILTDIEFADQQSVDQALWKNVYHQVIERFRLHLKEGDGEPAPGVR
TLLLALLHQGAVFFDALLQKLQTAFHFKLEDYMDGVAIRARPLRKTVKYALLSAQRYMIC
QGDIARYREQTSDSANYGKARSWYLRAQQIAPKNGRPYNQLALLAVYTKRKLDAVYYYMR
SLAVSNPILTAKESLMSLFEEARRKADQLERRRRQDGEGLWRGPAVRGQVRGPEGARVEL
WIRPHASGARRGGSESSRESEQDGELSTLSASDLNKRFILSFLHAHGKLFTKVGMESFPS
VALRVLQEFGALLQHSPTALGRTRLLQLITINMFTVHHTHSRVEGEVRSVLHQQSTGLGL
AMFALLLQRCTQLLRETPAEPILMENGEGAGQGNEADGMVRVSAFPLDLRELLPSIKVWS
DWMLGHPDEWNPPPCNINGGPDVWRCLADLCNALARVEHEEAPLYTADTEEPEGDEELRL
LLLEEDKLLAGFIPLLAAPLEPCYTDPHTDTGIAADCKRVTVLKYFLEALCGQEEPLLAF
KGGKYVSMATGPSLNPWTERGKKKESPEKGDDVIVEAESSLSTSEDGEAEDDIRELRARR
SVLTNKLAEQQKRRDKIQAVLQTGGQLQLEVRPYYLVPDTNGFIDHLDGLRTLLRSAAYV
LVVPLIVITELDGLAKGQDGFGGGGNYGNGAHVRAVQEKARQAVAFLERGFEAREPGLRA
LTSRGNQLESIAFRSEDTSGQQGNNDDVILSCCLHCCKDTEDVLPETPGPVRLHREVVLL
TDDRNLRVKALTRNVPVRDIAAFLSWAKVG
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atggcccagctcaggttggagctgctgtcagtgtaccagcaggtcatcctgacggacatt
gagtttgccgaccagcagagtgtggaccaggccctgtggaagaacgtctaccaccaggtc
atcgagcgcttccgcctgcacctcaaggagggggacggcgagccagcccccggagtcagg
accctgctgctggcgctgctccaccagggggctgtgttcttcgacgctctgctccagaag
ctgcagacggccttccacttcaagctggaggactacatggacggcgtggccatcagagcg
cgacccctacgcaaaacggtgaagtatgctctgctcagtgcccagcgctacatgatctgc
cagggagacatcgcccgctaccgggagcagaccagcgactccgccaactacggcaaggcc
cgcagctggtacctgcgggcccagcagatagccccgaagaacggacgcccctacaaccag
ctggccctgctggcggtttacacgaagcggaagctggacgctgtgtattactacatgcgc
agcctggccgtgtccaaccccatcctcacagccaaggagagcctgatgagcctgtttgag
gaggccagacgcaaggcggaccagctggagcggcgcaggaggcaggacggagaggggctg
tggcgaggcccggcggtgaggggccaggtgaggggccccgagggggcccgcgtggagctc
tggatccgcccccacgcctcgggggcccgccgggggggcagcgagtccagccgtgagtct
gagcaggacggggagctgagcactctgagcgccagcgacctcaacaagaggtttattctg
agtttcctgcacgcccacggaaagctcttcactaaagtaggcatggagtccttcccgtcg
gtggcgctccgggtgctgcaggagttcggggcgctcctgcagcacagccccacggcgctg
ggacgcacacggctgctgcagctcatcaccatcaacatgttcaccgtccaccacacccac
agcagagtggagggggaggtgcgctccgtgctgcaccagcagtccaccggtctgggtctg
gccatgttcgcactgctcctccagcgctgcacccagctgctgagagagacccccgcagag
ccaatcctgatggagaacggagagggggcggggcaaggcaacgaggccgacggcatggtg
agggtctctgccttcccattggacctcagagagctgctgcccagcatcaaggtctggtcc
gattggatgttgggacacccggacgagtggaacccgcctccgtgcaacatcaacggcggc
cctgacgtgtggcggtgcctggccgacctgtgtaacgccctggcccgcgtggagcacgag
gaggctcccctgtacacggccgacacggaggagccggagggcgacgaggagctgcgcctg
ctgctgctggaggaggacaagctgctggctggcttcatccccctgctggcagcccccctg
gagccctgctacacagacccccacaccgacacgggcatcgcggcggactgcaagagggtg
acggtgcttaagtacttcctggaggcgctatgcggacaggaggagcctctgctggccttc
aagggcgggaaatacgtctccatggcgaccggcccgtccctcaacccctggacggagcgc
gggaagaagaaggagtccccggagaagggagacgacgtcatcgtggaggcggagtcgtct
ctgtcgacctcggaggacggagaggcggaggacgacatcagagagctgcgggcgcggcgc
agcgtgctgaccaataaactggccgagcagcagaagaggcgggacaagatacaggccgtg
ctgcagacgggcgggcagctgcagctggaggtgcggccgtactacctggtcccggacacc
aacggcttcatcgaccacctggacgggctgcgcacgctgctgcgctcagccgcctacgtc
ctggtggtgccactgatagtgatcacggagttggacggcctcgccaagggccaggacggc
ttcggcggcggcggtaactacggcaatggcgcccacgtgcgggcggtgcaggagaaggcg
cggcaagccgtggccttcctggagcgcgggtttgaggcccgggagcccgggctgcgggcg
ctgaccagccgggggaaccagctagaatctatcgccttccgcagcgaggatacctcagga
cagcagggcaacaacgacgacgtcatcctgtcctgctgcctccactgctgcaaagacacc
gaggacgtcctgcctgagaccccaggtccggtgcggctgcaccgggaggtggtcctcctg
actgacgaccgtaacctgcgggtcaaagcgctgacccgcaacgtcccggtccgcgacatc
gccgccttcctcagctgggccaaggtgggctga
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