Gadus morhua (Atlantic cod): 115553924
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Entry
115553924 CDS
T10832
Symbol
setdb1
Name
(RefSeq) histone-lysine N-methyltransferase SETDB1 isoform X1
KO
K11421
[histone H3]-N6,N6-dimethyl-lysine9 N-methyltransferase [EC:
2.1.1.366
]
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh00310
Lysine degradation
gmh01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
115553924 (setdb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gmh03036
]
115553924 (setdb1)
Enzymes [BR:
gmh01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.366 [histone H3]-N6,N6-dimethyl-lysine9 N-methyltransferase
115553924 (setdb1)
Chromosome and associated proteins [BR:
gmh03036
]
Eukaryotic type
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
115553924 (setdb1)
Heterochromatin formation proteins
Other heterochromatin formation proteins
115553924 (setdb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF5604
Tudor_4
Tudor_5
SET
MBD
Pre-SET
Motif
Other DBs
NCBI-GeneID:
115553924
NCBI-ProteinID:
XP_030226327
Ensembl:
ENSGMOG00000005993
LinkDB
All DBs
Position
11:complement(7061146..7078252)
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AA seq
1253 aa
AA seq
DB search
MESSDRMETEGWDSGLEEELGVSLDELKKWIEDAVEQSDSVQRRKAQLDDLKQWVEKKEE
EEATTEELISNANQSVLECEKLVRKSYQDNGLVYKSSSEDESRGAGPLSSEVIEIDDEDD
DDDVIAVGCLVPPKKPGTPVKDGTFKDASTVLHKTTQQVHKLVRIVGKASPAAPQLRSSI
QPPHLGAHPTAPTVFVSQPPAFSPTKPNPAIEEGELTVEMTILGKKRTKTWHRGTLVAIN
HVGNGMFKYKVKFESKGKSLLSGNHVAFEYHPTLESLYVGARVVAKYKDGTLSWLYAGVV
AEMPNNKNRMRFLIFFDDGYASYVTLPELFPVCRPLKRTWEDIEDASCRDFIEEYITAYP
NRPMVLLKMGQIIKTEWEGTWWRSRIEEVDGSLVKILFLDDKRSEWIYRGSTRLEPMFNL
KLTSANTQEKKLAGQQRTRPNMGALRSKGPVVQYTSEGASPSKAAPLMAAVSSSLSSPLS
SPLSQFLSPSQSARFDNKQQMARKSTSPFIPGVGGTHASKILQAMSSSLNQIPSGRPAAT
MLSSLPFNSTNQFQKQPPLMSLVPMAPPPLTLPLSLPPPPLPAPVPAPPTLIAGSVVYQQ
PPYRAPADRIFYLMHTCQPACLTRIRPSRPDKHRGKNPLLTPLLYDFRRMTGRRKVNRKM
SFHVIYKAPCGLCLRNMEEIQHYLFQTRCDFIFLEMFCLDPYVLVDRPFHPSRPIYYILD
ITGGREDIPLSCVNEIDSTPPPKVAYSKERIPEDGVFINTSPDFLVGCDCTDGCRDKSKC
SCHQLTLQATGCTPGAQINQGAGFLHKRLDECLPTGIYECNKRCKCSAQMCTNRLVQHGL
QVRLQLFKTQNKGWGIRCLDDVAKGSFVCIYAGKILTDDFADKEGLEMGDEYFANLDHIE
SVENFKEGYESEAHCSDSEGSGVDMSKIQITPSALVSGSAPRRTSKKADATKKSTESPDS
SKDSNEEEEKDSKSDEDSDSSDDTFIKDTYLNSSSVWRSYTTRNQAKGNKEGSQDSKDGV
ATEDTKSLTMPEEMGKNKVASWLTTQGLKKEPEDSKGQLKLEGGKKQDVMTLSDSDDVQT
ISSGSDDNKDKKPAPNVKKRQVAVKSTRGFALKSNHGMMVKTGPSTAGGAPGGQGGNMGK
SGKSGGGGGGGGENAPRNTRQFFDGEESCYIIDAKLEGNLGRYLNHSCSPNLFVQNVFVD
THDLRFPWVAFFASKRIRAGTELTWDYNYEVGSVEGKELLCCCGSTECRGRLL
NT seq
3762 nt
NT seq
+upstream
nt +downstream
nt
atggagagcagcgatagaatggagactgaaggatgggattcggggctggaggaggagctg
ggggtctccctggatgaactgaagaagtggatcgaggacgcggtggagcagagtgactcg
gtgcagaggaggaaggcccagctggatgacctcaaacagtgggtggagaagaaggaagaa
gaggaggccaccaccgaggagctcatcagcaatgccaaccagtctgtgttggaatgtgag
aagctggtgaggaagtcgtaccaggacaatggcctggtgtataagagcagctcggaggac
gagtccagaggggccggacccctctcctccgaggtcatcgagatcgacgacgaggacgat
gatgacgatgtcattgccgtcggttgcttggttcctcccaagaagccgggtactcctgtt
aaagatggaacgtttaaggacgcttccaccgtcctgcataagaccacgcagcaggtgcac
aagttggtccggatagtcggcaaggcgtcgcctgctgcccctcagctcaggtcctccata
cagcccccacacctcggggctcatccgacggcacctaccgtatttgtctcccagcctccg
gccttctccccaaccaaacccaaccccgccattgaggagggggaactcacagtagaaatg
accattcttggaaagaaacgcaccaagacctggcacagaggcaccctcgttgctatcaac
catgttgggaacggcatgttcaagtacaaggtgaagtttgagagcaagggcaagagtctc
ctctctgggaaccacgtggccttcgagtaccaccccacgctggagagtctgtacgtgggc
gcgcgcgtggtcgccaagtacaaagacggcaccctgtcctggctctacgccggcgttgtg
gcagaaatgcccaacaacaagaaccgcatgaggtttttgatcttcttcgacgatggctac
gcctcctacgtcactcttcccgagctcttcccggtctgtcgtccgctgaagcgtacgtgg
gaggacatagaggacgcgtcttgccgggacttcatcgaagagtacatcacggcctacccc
aaccggcccatggtgctgctgaagatgggccagatcatcaagacggagtgggagggcacc
tggtggaggagccggatagaggaggtggatggcagcctggtgaagatcctcttcctggac
gacaagaggagcgagtggatctacagaggctccacccggctggagcccatgttcaatctc
aagctgacctcagccaacacccaggagaaaaagctggccggccagcagaggaccagaccc
aacatgggagcgctgaggagcaagggccccgtggttcagtacaccagtgagggggcctcc
cccagcaaagcagcccccctgatggctgctgtaagctcctcactcagctccccgctcagc
tccccactaagccagttcctctcaccctcacagtctgcacgttttgataataaacagcag
atggcgaggaaaagcacatctccgtttattccaggggtaggaggcacccatgcctctaag
atcctgcaggccatgtcctccagtctcaaccagatccccagcggaagaccagccgccacc
atgctgtcgtccttacctttcaactcaacaaatcagttccagaaacaacctccgttgatg
tctttggtccccatggcccccccacccctaacccttcccctatccctacctccacccccg
ctaccagccccagtcccagccccccccaccctcatcgccggctccgtagtctaccagcag
cccccctaccgcgcccccgcagaccgcatcttctacctgatgcacacctgccagcccgcc
tgtctgacccgcatccggccctcgcgcccggacaagcaccgggggaagaaccccctgctc
accccgctgctttacgacttccgccgcatgacgggccggcgcaaggtcaaccgcaagatg
tccttccatgtgatctacaaggcgccgtgcggcctgtgtctgcgcaacatggaggagatc
cagcactacctcttccagacgcgctgcgacttcatcttcctggagatgttctgcctggac
ccctacgtcctggtggaccggcccttccacccgtcccggcccatctactacatcctggac
atcaccgggggacgggaggacatccccctctcctgcgtcaacgagatcgactccacaccg
ccgcccaaagtggcctacagcaaggagcggatcccagaggacggagtgttcatcaacacc
agcccggacttcctggtcggctgcgactgcacagatggctgtagagacaagtccaagtgt
tcctgccaccagctgaccctgcaggccacaggctgtacccccggggcccagatcaaccag
ggcgccggcttcctccacaaacgcctagacgagtgcctgcccaccgggatctatgagtgc
aataagcggtgcaagtgctcggctcagatgtgcaccaaccggctggtgcagcacggcctg
caggtgcgcctgcagctctttaagacccagaacaagggctggggcatccgctgcctggac
gacgtcgccaagggctctttcgtctgcatctacgctgggaagatccttaccgacgacttc
gccgacaaagagggtctggagatgggggacgaatactttgccaacctggaccacatagaa
agcgtggagaacttcaaggagggctacgagagcgaggcacactgctcggacagcgagggc
agcggcgtggacatgtccaagatccagatcacgccctcggcgctggtgtcgggcagcgcc
ccgcgacggacatccaagaaggcggacgccactaagaagagcacagagagccccgactct
tccaaggacagcaacgaggaagaggaaaaggactcaaagagcgacgaagacagcgacagc
tcggacgacacgttcatcaaggacacctacctgaactccagctcagtgtggaggagctac
acgacgcgcaaccaggccaagggcaacaaggagggaagtcaagacagtaaagacggggta
gcgacggaggacacaaagtcgctaaccatgcctgaggagatggggaagaacaaagtggcc
tcgtggctcaccacccagggcctgaagaaggaacctgaggacagcaaagggcaactgaag
ttggagggagggaagaaacaagatgtgatgacgctgtcggacagtgatgacgtccagacc
atcagctcagggtctgacgacaacaaggacaagaaaccggctcccaacgtgaagaaaagg
caggtggcggtcaagtcgacgagaggcttcgccctgaagtccaatcacggcatgatggtg
aagaccgggccctccaccgcgggaggggcccccgggggccagggaggcaacatgggcaaa
tcggggaagagcggaggagggggaggcgggggcggggagaacgcgcccagaaacacgcgg
cagttcttcgacggagaggagtcatgctacatcatcgacgccaaactggagggcaacctg
ggccgctacctgaaccacagctgcagtcctaacctgttcgtccagaacgtgttcgtggac
acgcacgacctgcgattcccatgggtggccttctttgccagcaagcggatccgggcaggg
acggagctcacttgggactacaactatgaggtgggcagcgtggagggcaaggagcttctc
tgctgctgtgggtccaccgaatgcagaggaagactactatga
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integrated database retrieval system
