Gimesia maris: GmarT_31440
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Entry
GmarT_31440 CDS
T06180
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gmr
Gimesia maris
Pathway
gmr03030
DNA replication
gmr03410
Base excision repair
gmr03420
Nucleotide excision repair
gmr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gmr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GmarT_31440 (ligA)
03410 Base excision repair
GmarT_31440 (ligA)
03420 Nucleotide excision repair
GmarT_31440 (ligA)
03430 Mismatch repair
GmarT_31440 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gmr03032
]
GmarT_31440 (ligA)
03400 DNA repair and recombination proteins [BR:
gmr03400
]
GmarT_31440 (ligA)
Enzymes [BR:
gmr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GmarT_31440 (ligA)
DNA replication proteins [BR:
gmr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GmarT_31440 (ligA)
DNA repair and recombination proteins [BR:
gmr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GmarT_31440 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GmarT_31440 (ligA)
MMR (mismatch excision repair)
DNA ligase
GmarT_31440 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GmarT_31440 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
Bap31_Bap29_C
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
QEG17265
LinkDB
All DBs
Position
complement(4093633..4095648)
Genome browser
AA seq
671 aa
AA seq
DB search
MSVRTEIEELRKQLEHHNRLYYLDAKPEITDREYDRLMKRLEQLETDHPEYDSPESPTKK
VGGAPIEGFQTVAHRLPMLSIDNIFELEGLTEFEARICKLLGQDQVELTAEYKIDGVAVS
LIYEEGRLIQGLTRGDGQQGDDITHNVRTIIGVPLRLETENPPELLEVRGEAYISNSDFQ
VLNVEMQEQGKEPFANSRNTTAGGLKLLDPKLCAKRKIRFFAHGIGAMAGVDYQTHIEYL
AAIQEMGIPATPGVKAFPDLKTTMEHVQTMMDDLHALDFEVDGIVLKVNRFDQREELGNT
SKSPRWVVAYKWERYEAVTRAESIVFQVGKTGTVTPVANLEPVPIAGTTVSRASLHNRDE
MERLGIQIGDWVVVEKAGKIIPHVVRVEEHRRDGSQQELEFPTHCPECDTLLIQDEGGVY
IRCPNPNCPAMLRETLRYYASRQAMDIEGMGIKMIEQLLGQGLLKGLADIYRLHNYYGDL
VALERQGEKSIENLLAGIENSKTQPLWRLLTGLNIRHVGSSNARILEKQFGTIDEIAQQS
VEELAAVDEIGPVIAESVYTFFHSDFGTKLIDDLKSAGLNMGSPVEKTTTEAAGILDGKT
LVVTGTLTQFTRDEAKELIRKHGGKASGSVSSKTDYLVAGEKAGSKLSKAEELNVPVLTE
IEFLELLGESG
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgtcagttcgaaccgagattgaagaactacgtaagcagctcgaacatcataatcgtctg
tattacctggatgcgaaaccggaaatcaccgatcgtgaatacgaccggttgatgaaacgg
ctggagcagctcgaaactgaccatccggaatatgactctcccgagagccccaccaaaaaa
gtcgggggtgcaccgattgagggctttcagactgtcgcccaccgattaccgatgctgtcc
atcgataatatttttgagctcgaaggtctgactgagtttgaagcccgtatctgtaaactc
ctggggcaagatcaggttgaacttaccgccgagtacaaaatcgatggagttgcggtttct
ctgatttatgaagaggggcggctgatccaggggctgacgcgcggagatggccaacagggg
gatgacatcacgcataacgtgcggacgattatcggtgtgcctttgcggttggagacagag
aatccccctgaactgctggaggtcaggggcgaagcctatatcagcaattctgattttcag
gttttgaacgtggaaatgcaggaacagggaaaggaaccgttcgcgaattcgcggaatacg
accgccggtggcctgaaacttctggaccccaaactgtgtgccaaacgcaagattcgtttt
tttgcccatggtatcggggcgatggcgggggtggactaccagactcatatcgaatacctg
gctgccatacaggagatgggaatccccgcgacaccaggtgtgaaggcgtttcctgatctg
aaaacgacgatggagcatgtgcagaccatgatggatgatctgcacgcacttgattttgaa
gtcgacggcattgtccttaaggtcaatcgttttgatcagcgagaggaactgggaaatact
tccaaaagcccccgctgggtcgttgcctataaatgggaacgttacgaagcggttacccga
gccgagtcgattgtatttcaagtcgggaaaacggggacggtgacgccagtcgccaacctg
gaaccagtgccgattgcaggaaccacggtttcccgggccagcctgcataatcgcgatgaa
atggagcggctcggaattcagatcggggactgggtggttgtcgagaaggcagggaaaatt
attccgcacgtggtccgcgtagaagagcatcgccgcgatggcagtcaacaggaactggag
tttccaacgcattgtcctgaatgcgataccttgctgatacaggatgaaggcggcgtgtat
atccgctgtcccaatcccaactgtcccgccatgctgcgggaaacactgcgttattatgcc
tcacgccaggcgatggatatcgaaggcatgggcatcaagatgatagaacagttgctgggc
cagggactgttgaaaggcctggcggacatctatcgactgcacaattattatggtgacctg
gtcgctctggaacgccagggagaaaagtcgatcgaaaatctgctggcgggaattgaaaat
tcaaaaacacaaccactctggcgtctgctgacgggactgaatatcaggcatgtcggttcc
agtaatgcccggatccttgagaaacagttcggcacgattgatgagattgctcaacagagc
gtggaagaactggcggccgtcgatgaaatcggccccgtgattgccgaatcggtttatact
ttttttcattcggatttcggcacgaagctgatcgatgatttgaagtcggcaggattgaat
atggggagtcctgtcgaaaagacgacgacagaagctgccgggattctggacggtaaaact
ctggtcgtgacaggtactttgacacaattcactcgcgatgaagcgaaagaactgatccgc
aagcatggcggtaaagcttccggcagtgtctcttccaaaaccgactacctggttgcaggt
gagaaagcgggcagtaaactctcaaaagcggaagagttgaacgtacccgtcttaacagaa
atcgaatttctggagttgctgggcgagtctggttaa
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integrated database retrieval system
