Gaopeijia maritima: V3331_14165
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Entry
V3331_14165 CDS
T10606
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gmt Gaopeijia maritima
Pathway
gmt03030
DNA replication
gmt03410
Base excision repair
gmt03420
Nucleotide excision repair
gmt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gmt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
V3331_14165 (ligA)
03410 Base excision repair
V3331_14165 (ligA)
03420 Nucleotide excision repair
V3331_14165 (ligA)
03430 Mismatch repair
V3331_14165 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gmt03032
]
V3331_14165 (ligA)
03400 DNA repair and recombination proteins [BR:
gmt03400
]
V3331_14165 (ligA)
Enzymes [BR:
gmt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
V3331_14165 (ligA)
DNA replication proteins [BR:
gmt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
V3331_14165 (ligA)
DNA repair and recombination proteins [BR:
gmt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
V3331_14165 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
V3331_14165 (ligA)
MMR (mismatch excision repair)
DNA ligase
V3331_14165 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
V3331_14165 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
HHH
Nlig-Ia
PTCB-BRCT
HHH_3
DNA_ligase_ZBD
HHH_8
Motif
Other DBs
NCBI-ProteinID:
WZE80615
LinkDB
All DBs
Position
3203538..3205601
Genome browser
AA seq
687 aa
AA seq
DB search
MAETPLDSSAVPRSAPPAAVAEEARGLREALHRHAWLYYVEARPEIADEEYDRLFRRLQA
IEAEYPALYTPDSPTQRVGAEPQDAFETVPHLVPLLSLDSSQEEEAVRRFDERVRKALEH
PAAYLLEPKLDGASIELVYEAGVLVRAVTRGNGQRGEDVTENIRTIASVPLRLRGGERPV
PDRLAVRGEVMMTVSAFERFNERLLESDQEPYASPRNSAAGAIRQLDSRLTAERELVCFA
YDVLLVEGDRFHRDRDAFEALGAWGFLRPERVEVVETVEEIVAYHAAIGDDRDDLDYEID
GVVIKLDDLDARADLGATSHHPRWAMAFKFEPRKEVTRVERIAISVGRTGVLTPVALLLP
VQVGGVTISRASLHNREEVARKDVREGDRVRIQRAGDVIPQVVERIDEPDRVRAEPFRMP
DLCPACDTSVVEDGPRTVCPNRFGCPAQLKGRIVHFGARNALDIEGLGEETAALLVDRGL
VRELADLFDLEPGALVDLPGFAEKSATNLVEGIARRKTVELRRFLHGLGIPEVGVTVARD
LALHFRSVEAIRAADAEQLEAVPGIGPKMSEAIRGFLTTPANAVAIDHVLEKGFTLVAPE
GPADTELAGRRFVFTGGLERMTRSQARKLVEGAGARAVSSVSGETDWVVAGTDPGSKYDK
AVALGVAVLSEAEFVDLLREAGVEVPE
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
gtggccgaaactccgctcgattcctccgccgttccacggtctgcgccgccggccgcggtc
gccgaggaggcgcgtgggctgcgcgaagcgctgcaccgccacgcctggctctactacgtg
gaggcacggcccgagatcgccgacgaggagtacgatcgtctcttccggcggctgcaggcg
atcgaggcggagtacccggcgctgtacacccccgactccccgacgcagcgggtcggcgcc
gagccgcaggacgcattcgagacggtcccgcatctcgtgcctctcctctcgctcgactcc
agtcaggaagaggaggccgtacgacgcttcgacgagcgcgtgcggaaggcgctggagcac
ccggcggcctacctgctggagccgaagctcgacggcgcctcgatcgagctggtgtacgag
gcaggcgtactcgtgcgggccgtcacccgcggcaacgggcagcgcggcgaggatgtgacg
gagaacatccgcacgatcgcctcggtgccgctccgcctgcgggggggcgagcggccggtg
cccgaccggctcgcggtgcggggcgaggtgatgatgacggtgagcgccttcgagcgtttc
aacgagcggctgctcgagagcgaccaggagccctacgcctctccgcgcaactcggcggcc
ggcgcgatccgacagctcgactcccgactcaccgcggagcgcgagctggtgtgcttcgcc
tacgacgtcctgctggtggagggcgaccgcttccaccgcgaccgcgacgccttcgaggcg
ctgggggcctggggctttctgaggcccgagcgggtggaggtcgtggagacggtggaggag
atcgtggcctaccacgccgcgatcggcgacgatcgcgatgatctcgactacgagatcgac
ggcgtggtgatcaagctcgacgacctcgatgcccgcgccgatctcggcgccacctcgcac
cacccgcggtgggcgatggcgttcaagttcgagccgcgcaaggaagtcacgcgggtggag
cgcatcgcgatctcggtgggccgcaccggggtgctcacgccggtggcgctgctccttccg
gtgcaggtgggcggcgtgacgatctcgcgggcctctctgcacaatcgcgaggaggtggcc
cgcaaggacgtgcgcgagggcgaccgcgtgcgcattcagcgggccggcgacgtgatcccg
caggtggtggaacgcatcgacgagcccgaccgcgtgcgcgccgagcccttccgcatgccc
gatctctgcccggcctgcgacacctcggtggtggaggacggcccgcgcacggtctgcccc
aaccgcttcggctgtccggcgcagctcaagggacgaatcgtgcacttcggggcccgcaac
gccctcgacatcgaggggctgggcgaggagaccgccgcgctgctggtcgatcgcgggctc
gtgcgggagttggccgatctcttcgatctcgagccgggtgcactggtcgacctgcccggc
ttcgcggagaagtcggccacgaacctggtcgagggcatcgcccggcggaagacggtggag
ctgcggcgcttcctgcacggcctgggcattcccgaagtgggagtgacggtcgcgcgcgac
ctcgcgctgcacttccggtcggtcgaggcgatccgggcggccgacgccgagcagctcgag
gcggtgcccgggatcggccccaagatgtcggaggcgatccgcggctttctcaccaccccg
gccaacgccgtggccatcgaccacgttctggagaagggcttcaccctcgtggcgcccgag
ggcccggccgataccgaactggccggccggcgcttcgtcttcaccggcgggctcgagcgg
atgacccgctcgcaggcccgcaagctggtggagggggccggcgcccgcgcggtctcgtcg
gtgagtggcgagacggactgggtggtggcgggtacggatccgggatcgaagtacgacaag
gcggtcgcgctcggtgtggcggtgctctccgaggcggagttcgtcgacctgctccgcgag
gccggggtcgaggtaccggaatga
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integrated database retrieval system
