Girardinichthys multiradiatus (darkedged splitfin): 124855701
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Entry
124855701 CDS
T08099
Name
(RefSeq) thrombospondin-1-like
KO
K16857
thrombospondin 1
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu04115
p53 signaling pathway
gmu04145
Phagosome
gmu04148
Efferocytosis
gmu04350
TGF-beta signaling pathway
gmu04510
Focal adhesion
gmu04512
ECM-receptor interaction
gmu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
124855701
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124855701
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
124855701
04148 Efferocytosis
124855701
09143 Cell growth and death
04115 p53 signaling pathway
124855701
09144 Cellular community - eukaryotes
04510 Focal adhesion
124855701
09142 Cell motility
04820 Cytoskeleton in muscle cells
124855701
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gmu04131
]
124855701
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
gmu00536
]
124855701
Membrane trafficking [BR:
gmu04131
]
Endocytosis
Phagocytosis
Opsonins
124855701
Glycosaminoglycan binding proteins [BR:
gmu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124855701
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_ADAMTS
EGF_3
TSP1_CFP_C
EGF
cEGF
TSP1_CCN
Spectrin_SESTD1
Motif
Other DBs
NCBI-GeneID:
124855701
NCBI-ProteinID:
XP_047201665
LinkDB
All DBs
Position
19:complement(14197935..14206388)
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AA seq
1172 aa
AA seq
DB search
MMLCGILFLLVLGICEGARLAESRDDNSVYDLFELARVSKRHNGVTLVKGADPYSPAYKV
LNADLIPPVPDASFRDLLDSIQAERGFLLLLNLKQFKKTRGSLLTVEKTDGSGPLFEIIS
NGKANTLDLVYSTERQLQVVSIEDAGLANGHWKNLTLFVQEDRAQLFVGCEEINVSELDM
PIQTLLSREVADRARLRIGKGAAKDKFMGVLQNVHFVFGTTLDAILTNKGCKSGAALTQV
MTLDNPVNGSSPAIRTDYTGHKSKDLQTVCGFSCEDIASMFKELRGLNVIVKQLSNELQK
VHTDSQSLINQMNIHSGVCIHNGIVHKDKDEWTVDGCTECTCQNSATVCRKISCPLIPCA
NATVPDGECCPRCGTPSDYAEDGWSAWSDWTHCSVTCGRGIQQRGRSCDRINSKCEGTSV
QTRDCYPQECDKRFKQDGGWSHWSPWSSCSVTCGEGVMTQIRLCNSPTPQMGGRDCQGEG
RHTKVCQLSPCPINGGWGPWSPWDTCSATCGGGIQTRKHLCNDPVPKYGGKDCVGDSTMV
QVCNKEDCPIDGCLSNPCFPGTKCTSFPDGSFECGKCPLGYTGDGISCMDIDECKEVPDA
CLTHNGIHRCENTEPGYNCLPCPARFSGPQPFGRGVEQAIAKKQVCTPRNPCKDSSHNCH
KNANCIYLGVYSESMFRCECKPGYAGNGRICGEDSDLDGWPNTDLPCVENATYHCKKDNC
PNLPNSGQEDHDKDGLGDECDHDDDNDGIPDDRDNCPRVYNPAQYDADRDDVGDRCDNCV
FEANTDQTDTDNNGEGDACAVDIDGDGILNENDNCPYVYNVDQRDTDRDGVGDHCDNCPL
EHNPDQTDSDSDRIGDKCDNNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDD
DNDGIPDDKDNCRLAFNPDQLDSDGDGRGDVCKDDFDQDNVLDIHDVCPENFAISETDFR
RFQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGYDEFNAVDFSGTFFVNTDR
DDDYAGFVFGYQSSSRFYTVMWKQITQTYWSHTPTRAQGYSGLSIKVVNSTTGPGEHLRN
ALWHTGDTPGQVRTLWHDPKNIGWKDFTAYRWHLTHRPKTGLIRVVMYEGKRIMADSGNI
YDKTYAGGRLGLYVFSQEMVYFSDLKYECRDL
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgatgctgtgcggcatcctttttctgctggtacttggaatttgtgagggtgccagattg
gcagagagtcgagatgataacagtgtgtatgacctatttgagctggcgagggtgagcaaa
agacataacggagtgactctggtcaaaggtgcagacccttacagccctgcatacaaggtt
ctgaacgcagacctgatccccccagtccccgacgcatccttcagggacctcctcgattcc
atccaggccgagaggggctttctcctcctgctcaacctgaagcagttcaagaaaaccaga
ggcagtttgctgactgttgagaaaaccgacggatccggacccctcttcgagatcatttcc
aatgggaaggcaaacacccttgacctggtctactccaccgagagacagttgcaggtggtt
tccattgaggatgccggcttggccaatggacactggaagaacctcacgctgttcgtccag
gaggacagggcacagctttttgtgggctgtgaagagatcaatgtgtcagagctggatatg
ccaatccagactttgttgtctagagaggtggcagacagagccagactcaggattggaaaa
ggagcagcaaaggacaagtttatgggagtgcttcagaatgtccattttgtctttggaacc
actctagacgccatactgaccaataaggggtgtaaaagcggagctgccttaacacaggtg
atgaccctggacaacccagtcaatggttccagccctgccattaggacagattatactggt
cacaaatccaaagatctgcagactgtctgcggtttctcgtgtgaggacatcgccagcatg
tttaaggagctcaggggactcaatgtgattgttaagcagctgtcaaatgaactccaaaaa
gtgcatacagatagccagtcactgataaatcagatgaacattcacagtggagtctgcatc
cataacggcattgtgcacaaggacaaagatgaatggacagtggatggctgcacagagtgc
acctgtcagaactctgcaaccgtgtgtcgaaaaatctcctgtcctctcatcccctgtgct
aacgccactgtgcctgatggagaatgctgccctcgttgtggcacaccgagtgactatgca
gaggatggctggtccgcctggtctgattggacccattgttctgtgacttgtggccgtggc
atccagcagcgtggacgctcctgtgaccgcatcaacagcaagtgtgagggcacctctgtc
cagacccgtgactgctacccgcaggaatgcgacaagcgcttcaaacaggacggtggctgg
agccactggtcgccctggtcttcatgctctgtgacctgtggtgaaggggtcatgacacag
atccgcctctgcaactcccccacaccacagatgggtggcagagactgccagggagaagga
cgtcacaccaaagtctgccaactgtcgccctgccccattaacggaggatggggaccttgg
tcaccatgggatacctgctctgcaacctgtggtggaggaattcaaacaagaaaacatctc
tgtaatgaccctgtgcccaaatacggtggaaaagattgtgttggtgattccaccatggtt
caagtctgcaacaaagaggactgccctattgatggctgtctttccaacccatgcttccct
ggcacaaagtgcaccagcttccctgatggctcattcgagtgtggcaagtgcccacttggc
tataccggtgatgggatctcctgcatggatattgatgaatgcaaagaggtcccagatgct
tgtcttactcataacggaatccatcgttgtgagaacactgaaccaggttacaactgcctt
ccctgccctgcccgtttctctggtccccaaccttttggaagaggggtggaacaggcaatt
gctaaaaaacaggtttgcactccccgcaacccttgcaaggacagtagccacaactgccat
aaaaatgcaaactgcatatatttgggcgtctactctgagtcaatgttccgctgtgaatgc
aagccaggatatgctgggaatgggcggatttgcggagaggatagtgacctggatggatgg
cctaacactgatctgccatgtgtggagaacgccacttatcactgcaaaaaggataactgc
cccaaccttcccaactctggccaggaagaccatgacaaagatggccttggggatgaatgt
gaccatgatgatgacaatgatggaatccccgatgatagggataactgtcccagagtttac
aaccctgcccagtatgatgcagacagggacgatgttggcgatcgctgtgacaactgtgtg
tttgaggctaatactgaccaaacagacacagacaacaatggagagggtgatgcctgtgct
gtcgacattgatggtgacggcattctgaatgaaaatgacaactgcccatatgtgtacaat
gttgaccagagagacacagacagggatggtgtgggagatcactgtgataattgtcctctc
gagcacaacccagatcagaccgactctgattcagatcgtattggagacaaatgcgataac
aaccaggacattgacgaggatggtcaccagaacaacttggataactgcccctatatcccc
aacgccaaccaggcagaccatgacaaagacggcaaaggagatgcctgtgaccatgatgat
gacaatgacggcattcctgatgataaagacaattgccgacttgcctttaacccagatcaa
ctggactcggatggtgatggccgtggagatgtttgcaaggatgattttgaccaagataat
gtcctggacatccatgatgtttgccctgagaactttgccatcagtgaaacagacttccgc
agattccaaatggttcccttggatcccaaagggacctctcagattgaccccaactgggtg
gtgaggcatcaaggcaaggagctggtgcagactgtcaactgcgaccctggcattgctgtt
ggttatgatgagttcaatgccgtggatttcagtggaacgttcttcgtcaacacggacaga
gacgatgactatgccggatttgtgttcggctaccagtccagttcccgtttctacacagtg
atgtggaaacagatcacacagacctactggtcccacacgcccactagagctcaaggttac
tctggtttgtcaatcaaagtcgtgaactccaccacagggcctggagagcacctcagaaat
gctctgtggcacaccggagacaccccaggacaggttcgcactctgtggcatgaccccaag
aacattggctggaaagactttactgcctatagatggcacctaacacacagacccaagact
ggacttattagagtggtcatgtatgaaggcaagagaatcatggctgattctggaaatatt
tatgacaagacttatgctggtggccgactaggcctgtacgtcttttctcaggagatggtt
tacttctcagacctcaaatatgaatgtagagatttgtaa
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