Girardinichthys multiradiatus (darkedged splitfin): 124859112
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Entry
124859112 CDS
T08099
Symbol
slit1a
Name
(RefSeq) slit homolog 1a isoform X1
KO
K06838
slit 1
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
124859112 (slit1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
gmu00536
]
124859112 (slit1a)
Glycosaminoglycan binding proteins [BR:
gmu00536
]
Heparan sulfate / Heparin
Axon guidance molecules
124859112 (slit1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
EGF
Laminin_G_2
Laminin_G_1
LRRNT
LRR_1
LRR_9
hEGF
LRRCT
EGF_TEN
LRR_14
LRR_EndoS
EGF_Teneurin
EGF_DL_JAG
LRR_NXF1-5
Motif
Other DBs
NCBI-GeneID:
124859112
NCBI-ProteinID:
XP_047207604
LinkDB
All DBs
Position
22:complement(26147126..26255664)
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AA seq
1546 aa
AA seq
DB search
MPIEGSSFESSMGRLAGKWMWLLMLSALMLGNASACPALCTCSGTTVDCHGLGLKTMPRS
IPRNTERLELNGNNLTRITKSDFAGLKYLRVLQLMENQITVIERGAFDDMKELERLRLNR
NQLQQLPELLFQKNPGLSRLDLSENLIQSIPRKAFRGATDIKNFQLDKNHISCIEDGAFR
ALRGLEVLTLNNNNISSIPVSSFNHMPKLRTFRLHSNNLNCDCHLAWLSQWLRQRPTIGL
FTQCASPAELKGLNVAEVQKHEFTCSGHQESSSLQPCSTGGGSCPAMCTCSNNIVDCRGK
GLTAIPANLPDSMSEIRLEQNGIKSVPPGAFSPYKKLRRIDLSNNQISEIAPDAFQGLRS
LNSLVLYGNKITDLPGRVFDGLYSLQLLLLNANKIHCVRANAFQDLQNLSLLSLYDNKIQ
TLAKGTFTSLRAIQTLHLAQNPFICDCNLKWLADYLRSNPIETSGARCASPRRLANKRIG
QIKSKKFRCSAKEQYVIPGTEDTRLNNACNTDPVCPPKCRCESNVVDCSNLKLTKIPEHI
PASTAELRLNNNEITTLEATGVFKTLSQLKKINLSNNKITEIEDGAFEGASSVIELHLTA
NQIDSVRSGMFRGLEGLRMLMLRNNKISCVHNDSFTGLHNVRLLSLYDNHLTTITPGAFD
TLQTLSTLNLLANSFNCDCRLAWLGDWLRSRKIVTGNPRCQRPAFLKEIPLQDVALPDFR
CEEGQEESSCVPRPQCPSECTCLETVVRCSNKHLHTLPKGIPRNVTEMYLDGNQFSIVPK
ELSSFKYLQLVDLSNNKINSLTNSSFANMSQLTTLILSYNSLRCIPKMAFSGLHSLRLLS
LHGNEISELPDGIFNDVTSLSHLAIGANPLHCDCHLRWLSDWVKTGYKEPGIARCAGPQG
MESKLLLTTPAKKFECIGDVDTSVLAKCNPCLSGPCLNHGTCHNDPVEIYRCSCPPGIKG
KNCETALDACVSNPCANGGTCQMKDEDEGEYRCSCLLGFEGPTCQINVDDCEDNDCENGA
TCIDAINNYTCFCPPYYTGEMCEEMEDVCAPGRSPCQHQSTCLISTSGPKCVCSPGYVGD
DCSVNYDDCREHRCQNGAQCVDELNGYSCICPEGYSGQLCEVLPSPLSLCELADCQNNAP
CVERGGRALCQCPPEFGGPRCEKLVSVNFVDRDSYLLLSDLKNWPQANITLQVSTAEDNG
ILLYNGDNDHIAVELFQGHVKVSYDPGSQPGHAIYSTETINDGQFHTVELVTFDQMVNLS
IDGGLPTTMDSFGAVRPLNGEAPLYVGGRGPLQNTPPSSAGMPVDVHSGTFRLWQIQNGS
SFHGCIQNLYINNELQDFTKTQMKPGVVPGCEPCKKLYCVHGICQPDGFQGPVCHCQPGW
SGPHCDQPALNPCQGSKCVHGKCIPLDSQSYRCECEEGYRGALCNQRGELFNPCRRLSCK
HGRCQISDTGDAYCHCESGYTGELCDAESECRGEPVRDFYQVQRGYAICQTTRMVSWVEC
TGACDTGSCCVSQRLKRRKYTFECSDGTSFTEEVEKTIKCGCVGCM
NT seq
4641 nt
NT seq
+upstream
nt +downstream
nt
atgcccattgaaggtagcagttttgaatcaagcatgggtaggctggctgggaagtggatg
tggctgctgatgctctctgccctgatgttgggcaatgccagtgcctgcccggcgctttgt
acctgcagcggcaccacagtggactgccacggactaggtctcaaaactatgccaaggagt
attccccgcaacactgagagactggagctgaacggaaacaacctcacacgcatcaccaag
agtgactttgctggcctgaagtacctcagagttctacagctgatggagaatcagattaca
gtgatcgagcgtggggcttttgatgacatgaaggagctggagagactgcggctgaaccgt
aatcaactgcagcagcttccggagctgctatttcagaagaaccctggcttgtctcggctt
gatctgagtgagaaccttatccagtccatccccaggaaagctttcagaggagctacagac
ataaaaaacttccagctggataaaaaccacatcagctgcatcgaggacggcgccttcaga
gctctgagaggcctggaagtgctaacgctgaacaacaacaacatcagcagcatccctgtc
tctagcttcaaccacatgcctaaactcagaactttccgtcttcactccaacaacttaaac
tgtgattgtcacctggcctggctgtcccagtggctcagacagaggcctacgattggtctg
ttcacccagtgtgcttctccagcagagctcaaaggactcaatgtggcagaggtccagaaa
cacgaattcacctgctcagggcatcaggagtcttctagcctgcagccgtgcagcactggt
ggcggctcgtgtcctgccatgtgcacctgcagtaacaacattgtggactgcagagggaaa
ggcctaactgctattccagccaatctgccggacagcatgtcagagatacgcctggagcag
aacgggattaagtctgttcctcccggagccttctctccctacaagaaactgcgcaggata
gacctgagcaacaaccagatctcagagatagctcctgatgccttccagggcctgcgctcc
ctcaactccctcgtgctgtatggaaataagatcaccgacctgccgggtcgtgtgtttgac
ggcctctactctttgcaactgctgctgctgaatgccaataagattcattgcgttcgtgcc
aatgccttccaggatctgcaaaatctctccctactatcgctgtatgataacaagatccaa
actctcgccaagggcaccttcacttcacttcgagctatacaaaccctccacctagcacag
aacccttttatttgtgactgtaatctgaagtggctggcagactacctgcgctccaacccg
atcgagaccagcggcgcccgctgcgccagcccacgccgcctcgcgaacaaacgtattgga
caaatcaagagcaagaagttccgctgctccgccaaagagcagtacgtcatcccaggtaca
gaagacacccgtctcaataatgcctgcaacactgatcctgtgtgtcctcctaagtgtcgc
tgtgagtctaacgtagttgactgctccaacctgaaactcaccaagatccctgagcacatc
cctgcatctacagctgaactccgccttaacaataatgagataaccactcttgaggcaaca
ggagtttttaagacactttcccaattgaagaaaattaacctgagtaacaacaaaatcaca
gagattgaggatggggcttttgaaggtgcatcctccgtcattgagcttcacctcacagcc
aatcaaattgactcagttcgtagtgggatgttccgaggcctcgagggactgcgcatgcta
atgttgaggaacaacaaaatcagctgtgtccacaacgacagtttcacggggcttcacaac
gtccgtttgctgtctctgtacgacaaccatctgaccaccattactcctggagcctttgac
acactgcagaccctttctactctaaacctcttggccaactccttcaactgtgactgtcgg
ttagcgtggctcggtgattggctgagaagcagaaagattgtgacaggtaaccctcgctgc
cagcgtccggctttcctaaaggagatccccctacaggatgtagcactgcctgattttcgc
tgtgaggaggggcaagaggagtcaagttgtgttcctcgaccccagtgtcccagcgagtgt
acttgcctggagactgtggtgcgctgcagcaacaagcatctccacacactacctaaaggc
atccccaggaatgtgactgaaatgtaccttgatggaaaccagtttagtattgtccctaag
gagctgtcttccttcaaatacctacagctggttgacctgagcaacaacaaaatcaactct
ctgaccaactcatccttcgctaacatgagccagctgaccactctaattctgagctacaac
tccctgcgctgtatacccaaaatggctttcagtggactgcactcactgcggctgctgtct
cttcatggcaacgaaatctcagagcttccggatggcatcttcaatgatgtgacctccctc
tcccatttagcgattggtgccaaccctctgcactgtgactgccacctgcgctggctctct
gactgggtgaagactggatacaaagaacctgggattgctcgctgtgctggcccacagggg
atggagagcaaactgctcctcaccacacctgccaagaaatttgaatgtataggtgatgtg
gacacctcagtactggccaagtgtaacccctgtctttctggtccctgcctgaatcacggc
acctgtcacaatgacccagtggagatctacaggtgtagctgtcctcctggaatcaagggc
aagaattgtgaaacggctctggatgcctgtgtgagtaacccatgtgccaatggaggaacc
tgccaaatgaaagacgaggatgagggagagtaccgatgctcctgtctgctgggctttgag
ggcccaacttgccaaatcaatgttgacgactgtgaagacaatgactgcgaaaacggagcc
acctgcatcgatgccatcaacaactatacttgtttttgtcccccctactacacaggggag
atgtgtgaagaaatggaagatgtgtgtgctccaggaagaagcccctgccaacatcagtct
acctgcctcatcagcacctctggacccaagtgtgtgtgttctcctggctatgttggtgat
gactgcagtgtgaactatgatgactgcagggagcatcgctgtcaaaatggagcacagtgt
gtggatgagctgaatggatattcctgcatctgcccagaaggatatagtggtcagttgtgt
gaagttctgccatctcctttgtcactgtgtgagctggccgactgccaaaacaacgcccca
tgtgtggagcgaggtggacgtgccctctgccaatgtcccccagagtttgggggtccgcgc
tgtgaaaaactggtcagcgtcaactttgttgacagagactcttatttactgctctctgac
ctgaagaactggccacaagctaacatcaccctgcaggtttctacagctgaggacaatggt
atcctgttgtacaatggagacaatgaccatattgcagtggagctcttccaaggccatgtg
aaagtgagctatgaccctggcagccagccaggacatgccatttacagtaccgagaccatc
aatgatggtcagttccacacggtggagctggtgacctttgaccagatggtgaacctgtcc
attgacgggggtctccctaccacaatggacagctttggggcggtgcggcccctcaacggg
gaggctccactatatgtggggggtaggggccctctccagaacacacccccctcctctgca
ggcatgcctgtggacgtccactctggcactttccgtctctggcagatccagaacggttcc
agcttccacggctgcattcagaacctgtacatcaacaacgagctccaggacttcaccaag
acccaaatgaagcccggtgtggtgccagggtgcgagccctgcaaaaagctctactgtgtc
catggcatctgccagcccgatgggttccagggaccggtgtgccactgccagcccggctgg
agcgggccgcactgcgaccagccagctctcaacccctgccagggcagcaaatgcgtccat
ggaaagtgcattcctctggactcacagtcataccgctgcgagtgtgaagagggctaccga
ggcgcgctatgtaaccagcgtggagagctgttcaacccctgccgccgtctctcctgcaaa
cacggtcgctgccagatatctgacactggtgacgcatactgtcactgcgaaagtggctac
acaggggaactctgtgatgcagagtctgaatgtcgaggtgagccggtgcgagacttctac
caggtgcagcgaggttacgccatctgtcaaacaacccgtatggtctcctgggtggagtgc
accggagcttgtgacacagggagctgctgcgtcagccagaggctgaaacgcagaaaatac
acctttgagtgcagcgatggaacgtccttcaccgaggaggtggaaaagaccatcaagtgt
ggctgcgtgggctgcatgtag
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