Girardinichthys multiradiatus (darkedged splitfin): 124866796
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Entry
124866796 CDS
T08099
Symbol
traf6
Name
(RefSeq) TNF receptor-associated factor 6 isoform X1
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu04010
MAPK signaling pathway
gmu04120
Ubiquitin mediated proteolysis
gmu04140
Autophagy - animal
gmu04144
Endocytosis
gmu04620
Toll-like receptor signaling pathway
gmu04621
NOD-like receptor signaling pathway
gmu04622
RIG-I-like receptor signaling pathway
gmu05132
Salmonella infection
gmu05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
124866796 (traf6)
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
124866796 (traf6)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
124866796 (traf6)
04140 Autophagy - animal
124866796 (traf6)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
124866796 (traf6)
04621 NOD-like receptor signaling pathway
124866796 (traf6)
04622 RIG-I-like receptor signaling pathway
124866796 (traf6)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
124866796 (traf6)
09171 Infectious disease: bacterial
05132 Salmonella infection
124866796 (traf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gmu04131
]
124866796 (traf6)
04121 Ubiquitin system [BR:
gmu04121
]
124866796 (traf6)
Enzymes [BR:
gmu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
124866796 (traf6)
Membrane trafficking [BR:
gmu04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
124866796 (traf6)
Ubiquitin system [BR:
gmu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
124866796 (traf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_UBOX
TRAF6_Z2
zf-C3HC4_3
zf-C3HC4_4
zf-RING_5
TRAF3_RING
zf-TRAF_2
RING_XB3-XBAT31
zf-Nse
zf-rbx1
CEP104_ZnF
U-box
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
124866796
NCBI-ProteinID:
XP_047218698
LinkDB
All DBs
Position
4:45499375..45507555
Genome browser
AA seq
561 aa
AA seq
DB search
MACFESNKGSLEEDSYEGAVGGELSECALAMLEKEKESPLSPSESPSTLINSSSLQGYDV
EFDPPLESKYECPICLMALRNAIQTRCGHRFCKSCIEKSIRDTGQRCPVDNEMLSEDQLF
PDNFAKREILSLTVRCPNSGCADKMELRHLENHLAMCEFATVPCSQCQQPVRKSYLEEHK
TDECQRRPMSCPDCVASFVFEEKELHEQQCPFASVRCQYCELDLIREQMESHYDTDCPKA
PIACNFSMFGCKEKMQRYDLAQHMQDFTQMHMRYMAEFLRSLSLNGTSPKPHRTLGPSIS
SEDIGAAASMPAYGGLRAAVSCSPAACQPSEVMQMLREMDGRLVKQNHLLCEVTILQRTQ
TGHLAELRRRVSMLEETIKELEAEQCHGIFIWRLKGFSALMRNQEAGLPVVEHSPGFYTG
RPGYKLCLRLHLQTPNAPRCSNYISLFVHTMQGAFDGQLTWPFQGTIRLAIIDQGPESQH
HMEVMETKPDLQAFQKPINPRNPKGFGYVTFMHLQQLNQRAYIKDDTLLIRCEVTPRFDS
SFHREGPVVQPRGPEASLSRE
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atggcttgctttgaaagcaataaggggagcttggaggaggacagctatgaaggagcagtt
ggtggagagctgtccgaatgtgccttggcaatgctggaaaaagaaaaggaatccccttta
agcccgtcagagagtcctagcaccttaattaacagttcatcccttcagggctatgatgtg
gagtttgacccacccctcgagagcaaatatgagtgccctatctgcctgatggcgttgagg
aatgccattcaaacgcgctgtggtcaccggttttgcaagagctgcattgagaagtccatt
cgtgatacaggacagcggtgccctgtggacaatgaaatgctgtcagaagaccaactgttt
cctgataactttgccaaaagggagattctatcgctgactgttcgctgtccaaactctggc
tgtgccgacaaaatggagctccggcatttagagaatcatttggccatgtgtgagttcgcc
actgtgccttgttcgcagtgccagcagcctgtgagaaagagctacctagaggagcacaaa
actgatgagtgccaaagaaggcctatgtcatgcccagactgtgtggcatcctttgtgttt
gaggagaaagagctacatgagcagcagtgcccgtttgccagcgtgaggtgccaatactgt
gagttggatcttatcagagagcagatggaatcccattatgatacagattgtccaaaagca
cccattgcctgtaactttagcatgtttggatgtaaggaaaagatgcagcgctatgacctg
gctcagcacatgcaggacttcactcagatgcatatgcgctacatggcagagtttttgcgt
agcctcagcctcaacggcacctcacctaaaccccaccgaacactagggccttccatttcc
tctgaggatattggtgctgcagcatcaatgccggcctacggtgggctcagagcagctgtg
agctgcagcccagctgcatgtcagcccagtgaggtgatgcagatgctcagagagatggat
ggccgtttggtgaagcagaatcacctgctgtgtgaggtgaccatattacaaaggacccaa
acagggcaccttgcggagctccggcgtagggtctcaatgctggaggaaaccataaaggag
ctggaggccgagcagtgccacggtattttcatctggcgcctcaaaggtttctctgccctc
atgcgcaaccaagaagcaggcctgccagtggttgagcacagccccggcttctacacgggc
cgtcccggctacaagctgtgtctccgcttacatctgcagacacccaacgccccacgctgt
tccaactatatctccctttttgtccacactatgcaaggagctttcgatggtcagctgact
tggccctttcaagggacgatccggcttgccataatagaccagggacctgagagtcagcat
cacatggaggtcatggagacaaagccagacctgcaagccttccagaaacccataaatcca
cgcaatcccaaaggatttggctacgtcacctttatgcacctgcaacagctgaatcagaga
gcttatataaaagatgacactctgctgatccgctgtgaggttacaccgcgctttgatagc
tcgtttcatagggagggaccagtcgtacagccaagagggcctgaagcatcgctttcaaga
gaataa
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