Girardinichthys multiradiatus (darkedged splitfin): 124882460
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Entry
124882460 CDS
T08099
Symbol
thbs1b
Name
(RefSeq) thrombospondin-1 isoform X1
KO
K16857
thrombospondin 1
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu04115
p53 signaling pathway
gmu04145
Phagosome
gmu04148
Efferocytosis
gmu04350
TGF-beta signaling pathway
gmu04510
Focal adhesion
gmu04512
ECM-receptor interaction
gmu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
124882460 (thbs1b)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124882460 (thbs1b)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
124882460 (thbs1b)
04148 Efferocytosis
124882460 (thbs1b)
09143 Cell growth and death
04115 p53 signaling pathway
124882460 (thbs1b)
09144 Cellular community - eukaryotes
04510 Focal adhesion
124882460 (thbs1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
124882460 (thbs1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gmu04131
]
124882460 (thbs1b)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
gmu00536
]
124882460 (thbs1b)
Membrane trafficking [BR:
gmu04131
]
Endocytosis
Phagocytosis
Opsonins
124882460 (thbs1b)
Glycosaminoglycan binding proteins [BR:
gmu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124882460 (thbs1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_CFP_C
EGF_3
TSP1_ADAMTS
EGF
cEGF
TSP1_CCN
Motif
Other DBs
NCBI-GeneID:
124882460
NCBI-ProteinID:
XP_047244826
LinkDB
All DBs
Position
15:9298937..9312496
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AA seq
1185 aa
AA seq
DB search
MAGYFDLIAAADSCSTMKVTGIFLLLMLWTCEGARVAENRDDNSVFDLFELIRVPSKNHG
VALAKGDDPYSPAYRILNPDLIPPVPESAFRDLIDSIHAERGFLLLLNFKQFKRTRGSLL
TVEKRDGSGPIFEIVSNGKANTLDIVYSTENKQQVVSIEEVDLATGHWKNITLFVQEDRA
QLFAGCEEVNTAELDAPIQNILTHSTPAGAQLRVGKGAVNDRFMGVLQNVRFVFGTTLDA
ILRNKGCQSFAPSDTMIVTNLNGSSAIRTEYTGHKTKDLQMVCGFSCEDLISMFKELKSL
GVVVKELSYELRQLTNENKLIKNHIGIHSGVCIHNGIMRKNKDEWTVDDCTECTCQNSAT
VCRKISCPLIPCANATVPDGECCPRCGTPSDYAEDGWSPWSEWTHCSVSCGRGIQQRGRS
CDRINNICEGTSVQTRDCYLQECDKRFKQDGNWSHWSPWSSCSVTCGAGVITRIRLCNSP
TPQLGGRDCVGEGRQTEKCEKSPCPINGNWGPWSPWGTCTLTCGGGVQTRKRQCNDPAPQ
YGGKECVGDAIDRQMCSKKACPIDGCLSNPCFSGAKCTSFPDGSWKCGKCPVGYSGNGIK
CKDVDECKEVPDACFEFNGVHRCENTEPGYNCLPCPPRYSGPQPFGKGVEQAATNKQMCT
PRNPCLDGSHDCNKNARCNYLGHFSDPMFRCECKPGYAGNGHICGEDTDLDGWPNADLVC
VENATYHCKKDNCPNLPNSGQEDYDKDGIGDACDDDDDNDGIPDDRDNCPFVYNPRQYDY
DRDDVGDRCDNCPYNSNPDQTDTDNNGEGDACAVDIDGDGILNEKDNCPYIYNVDQRDTD
LDGVGDMCDNCPLEHNPDQVDSDDDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADH
DKDGKGDACDHDDDNDGIPDEKDNCRLAFNPDQLDSDGDGRGDACKDDFDQDNVPDIYDV
CPENFDISETDFRKFQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGYHEFNA
VDFSGTFFINTERDDDYAGFVFGYQSSSRFYVVMWKQITQTYWSSKPTKAQGYSGLSIKV
VNSTTGPGEHLRNALWHTGNTEGQVRTLWHDPKNVGWKDFTAYRWHLIHRPRTGLIRVVM
YEGKKIMADSGSIYDKTYAGGRLGLFVFSQEMVYFSDLKYECRDA
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atggctggatatttcgatttaattgcggcagcagattcgtgcagcaccatgaaggtgact
ggaatatttttgctgttgatgctttggacctgtgagggtgcgagagtcgcagagaatcga
gacgacaatagtgtgtttgatttgtttgagctcatccgagtccccagtaagaaccacggg
gtcgccctggcgaagggagacgacccatacagccctgcctacaggatccttaacccggac
cttatccccccggtccccgagagcgcctttagggacctgatcgactcaatccacgcagag
aggggcttcctacttttgctcaacttcaagcagttcaaacggaccagaggcagcctcctg
accgtggagaagcgagacggctccggacccatcttcgagatcgtctccaacggcaaggcg
aacaccctggacatcgtttactccaccgagaacaagcagcaggtggtttccatcgaagag
gtagatctggccacgggtcactggaaaaacatcacgctgttcgtgcaggaggaccgggcg
cagctgttcgccggatgcgaggaggtgaacaccgccgagctggatgcgcccatccagaac
atcctgacgcacagcaccccggccggcgcgcagctccgagtcggcaagggggcagtgaac
gacaggttcatgggggtgctgcaaaacgtgcggtttgtgtttggaacaacactggacgca
atcctgcgcaacaaaggatgccagagctttgctccaagtgacacaatgattgtgacgaat
ctaaacggttcctctgccatcagaacagagtacactggacacaagactaaagacctgcag
atggtctgtggcttctcctgcgaggatcttatcagcatgttcaaggagctgaaaagcctc
ggtgtggtggtcaaggagctgtcctatgagctccgtcagctgacgaatgagaacaagctt
attaagaaccacattggcatacatagtggcgtctgcatccacaatggcattatgcgcaaa
aacaaagacgagtggaccgtcgatgactgtactgagtgcacttgtcagaactctgccact
gtgtgccgcaagatctcctgccctctgatcccctgtgctaatgccactgttcccgatggg
gagtgctgtccacgttgtggaacaccgagtgactatgccgaggacggctggtcgccctgg
tctgaatggactcattgttcggtgtcatgtgggcggggcatccagcagcgtgggcgctct
tgcgaccgcatcaataatatctgcgagggcacctccgtgcaaacccgtgactgctatctc
caggagtgtgacaagcgcttcaagcaggacggaaactggagtcattggtcaccctggtcg
tcgtgctctgtcacctgtggcgctggtgtcatcactcgtatccgcctctgcaactccccc
acgcctcagctgggagggagggactgtgtaggagagggccgacaaactgaaaagtgtgag
aagtctccatgtcccattaatgggaactggggaccctggtcaccttggggtacatgcacc
ctcacctgtggtggtggagtccaaactcgtaagcgccagtgcaatgaccctgctccacag
tatggtggtaaagagtgtgttggggatgctatagacagacagatgtgcagcaagaaagct
tgcccaatagatgggtgtttgtccaatccttgcttttctggagccaaatgcactagtttc
cctgatggttcctggaagtgtggaaaatgcccagttggctactcaggcaatggcataaag
tgtaaagatgttgatgagtgcaaggaggtcccagatgcttgctttgagtttaatggtgtg
caccgctgtgagaatacagagccaggctacaactgtctgccctgccctcctcgctactca
ggaccccaaccatttggcaaaggtgtggagcaagctgctactaacaaacagatgtgcaca
ccacgtaatccttgccttgatggaagccatgactgcaacaaaaacgcccgctgtaactac
cttggacacttttccgatcccatgttccgctgtgagtgcaagcctggatatgctggcaat
ggtcatatctgtggagaggacacagatctggatggatggcccaatgctgatctggtctgt
gtggagaatgccacctaccactgtaaaaaggacaattgtcccaatctcccaaactcaggg
caggaagattatgataaggatggaattggggatgcatgtgatgacgatgatgacaatgat
ggcattcctgatgacagggacaactgtccgttcgtgtacaatcccaggcaatatgattat
gaccgcgatgacgtgggggaccgttgtgacaactgcccttacaatagtaacccagaccag
acagacacagacaacaacggcgagggagatgcctgtgctgtggacattgatggagatgga
atactgaatgagaaggacaactgtccctatatatacaacgttgaccagagagacaccgat
ctggacggagtgggagacatgtgtgataactgtcctctggaacataatcccgatcaggtg
gattcagatgatgatcgagtgggagacaagtgtgacagtaaccaggacattgatgaggat
ggacaccagaacaacctggacaattgcccatatatccccaatgccaaccaggctgatcat
gataaggatggcaagggagatgcctgtgaccatgatgacgacaacgacggcatccctgat
gaaaaagacaactgtagactggctttcaaccctgaccagttggattctgatggcgatggt
cgtggagacgcttgcaaagatgattttgaccaagacaacgtgcctgatatctatgatgtg
tgtcctgagaactttgatatcagtgagacagacttccgcaagttccaaatggttcctctg
gacccaaaaggcacctcccagattgatcctaactgggttgtccgccatcaaggcaaagag
ctggttcagactgtcaactgtgatccgggcattgcagtcggttaccatgagttcaacgcc
gtagacttcagtggaactttctttatcaacacagagagagatgatgattacgctggcttt
gtgtttggttaccagtccagttctaggttctacgttgtgatgtggaagcagatcactcag
acctactggtcaagtaaacctaccaaggcccagggctactcaggcctgtccatcaaagta
gttaactccaccaccggcccaggagagcacctcagaaatgccctctggcacacaggcaac
actgaaggacaggtccgcactctttggcatgaccctaaaaatgtcggatggaaagacttc
actgcctacaggtggcatctgatccacaggccaagaacaggacttattagagttgtaatg
tatgagggtaagaagataatggcagattctggtagcatctatgacaagacatatgcaggt
ggcaggcttggtctttttgtcttctcacaagagatggtttatttctcagacctcaagtat
gaatgcagagacgcataa
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