Glycine max (soybean): 100782386
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Entry
100782386 CDS
T01710
Name
(RefSeq) ABC transporter I family member 20
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
gmx
Glycine max (soybean)
Pathway
gmx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100782386
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmx03019
]
100782386
Messenger RNA biogenesis [BR:
gmx03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
100782386
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
ORC-CDC6-like
AAA_15
AAA_23
nSTAND3
Arf
AAA
AAA_28
AAA_22
AAA_24
RsgA_GTPase
AAA_30
Zeta_toxin
AAA_7
ATP-synt_ab
Mg_chelatase
PduV-EutP
TsaE
Motif
Other DBs
NCBI-GeneID:
100782386
NCBI-ProteinID:
XP_003536037
UniProt:
I1LB20
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All DBs
Position
10:complement(38162353..38165565)
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AA seq
333 aa
AA seq
DB search
MAGKGTHSDSKAATIVIKDLRFTYPGIDGHPPPGSTPLIQDFNLTLSSGHRCLLVGSNGA
GKTTLLKILGGKHLVEPDMVRVLGRSAFHDTTLISSGDLCYLGGEWRRDVAFAGFEVPIQ
MDISAQKMIFGVPGIDPQRRAELIKVLDIDLSWRLHKVSDGQRRRVQICMGLLKPFKVLL
LDEITVDLDVLARADLLRFLRKECDERGATIIYATHIFDGLEDWPTNIVYVAHGKLQLAM
PMDKVKEISKLSLMRTVESWLRKERDEDRKKRKERKAAGLPEFGKRVEESRVTGDPARAA
VRVINNGWAAGRLTSTVAGEENFLLSSNRVLRQ
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atggccggtaaagggacccattcagattcaaaagcagcaacaattgtgattaaggatctg
agattcacataccccggcatcgacggccaccctccgccgggttccactcccctcattcag
gatttcaatctcactctttcttccggccatcgctgcctcctcgtcggttccaacggcgcc
ggaaagaccactctcctcaagatattaggagggaaacacttggtggagcctgacatggtt
cgcgtgctcggaagatcagcttttcacgacaccactctaatatcttctggtgatctctgt
taccttggtggcgagtggaggcgagatgttgcttttgcgggttttgaggttccaatacaa
atggacatatctgctcaaaaaatgatatttggtgtgcctgggattgatcctcaaagaaga
gccgagctaatcaaggtattagatatcgatctttcctggagattgcataaagtatctgat
ggtcaaagaagaagggtgcagatttgtatgggtctcctcaaaccattcaaggttcttctt
ctcgatgagataacagttgaccttgatgttctagcaagagctgaccttctgagatttcta
agaaaggaatgtgacgagaggggtgccactattatctatgcaacacatatatttgacggc
ctcgaggattggccaacaaatattgtttatgtagcccatgggaagctgcaactagcaatg
cctatggacaaagtcaaagaaattagcaaattatcactaatgagaacagtagaaagttgg
ctgcggaaagaacgagatgaagatagaaagaaaaggaaagagagaaaagcagctggtctt
cctgaatttggaaagcgagttgaggaaagccgtgtaacaggggatccagcgcgtgctgca
gttcgagtaattaataatggttgggctgcaggacgattaacttccaccgttgctggtgag
gaaaactttctcctgagctcaaaccgagtattgaggcagtag
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