Glycine max (soybean): 100789497
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Entry
100789497 CDS
T01710
Name
(RefSeq) 5'-3' exoribonuclease 4 isoform X1
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
gmx
Glycine max (soybean)
Pathway
gmx04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
100789497
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmx03019
]
100789497
Messenger RNA biogenesis [BR:
gmx03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
100789497
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
DUF3618
Motif
Other DBs
NCBI-GeneID:
100789497
NCBI-ProteinID:
XP_003521740
UniProt:
I1JRL0
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All DBs
Position
3:45405059..45417157
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AA seq
960 aa
AA seq
DB search
MGVPAFYRWLADRYPLSIADVVEEEPSVGSGAVDVSKPNPNGMEFDNLYLDMNGIIHPCF
HPDGKSAPTTYEDVFKSIFDYIDHIFSLVRPRKLLYLAIDGVAPRAKMNQQRSRRFRAAK
DAAEKDAAEAEAEIERLREEFEGEMKLLSSKVKPETYDSNVITPGTPFMGVLSVALQYYI
QTRLNYNPGWRNTKVILSDSNVPGEGEHKIMDYIRLQRNLPGFNPNTRHCLYGLDADLIM
LSLATHEVHFSILREVITFPGQQEKCFQCGQVGHFAAECRGKPGEKAEDWNPVDDTPIHK
KKYQFLNIWVLREYLQYEMEIPNPPFEIDFERIVDDFVFLCFFVGNDFLPHMPTLEIREG
AVNLLMHIYRKEFTAMGGYLTEAGEVFLERVEHFIQSVAVHEDQIFLKRVRIQQATEINE
EMKARARGEMPGEPRASVLDKVKLGEPGYKERYYAEKFGALDLEKIEKIKKDTVLKYVEG
LCWVCRYYYQGVCSWQWYYPYHYAPFASDLKDLADLEITFFLGEPFKPFDQLMGTLPASS
SSALPEKYRDLMIDPSSPILQFYPADFEIDMNGKRFAWQGVAKLPFIDEKKLLSATSKLE
ATLTEEEQLRNSKMLDLLYVSSAHNLAPHILSYHQYSCQLPLHERPALPIDPRASDGMNG
YLWLYERNVLRTTVSSPIKGLQDIEFNQVLNITYLNPRKHRHIPKPPDGVLMPKKILKAI
DIKPFPVLWHEDNSGRRQGRERQQVHGAMAGPQLGEAAHRLVKNSLNIKSNNMPYGSPEQ
FPGHHAMNRLRSAGPSGSGKYYGEDTSGYYGQHYNHQGIITRPRYPVSSNGGHNDKQNFR
IQDRSYHHDQYYNGTTGFYTMAMEEGARARPYAVPLPRTPAVTLSRPPNSGSTTNGQHQF
VQNMGPPIPPPNWITRVPDTNGIYAGHQETALGGTYDKQNMKVYQVKTRQPQDMPEYGNQ
NT seq
2883 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccagcgttctaccggtggctcgcggatcggtacccactctcgatcgccgac
gtcgtggaggaggagccatctgtcggctccggcgccgttgatgtgtctaaacctaatcca
aatggcatggagttcgacaacttgtacttggacatgaacggcatcattcacccctgtttt
caccctgatggcaagtcagcacctactacctacgaagatgtattcaaatcaatctttgac
tatattgaccatatattttcattggttcgcccaaggaagcttctttatcttgcaattgac
ggtgttgcaccaagagccaaaatgaatcagcaacgttcacggcgttttcgagccgcaaaa
gatgcagctgagaaagacgcagctgaggctgaagctgaaattgaaagacttagggaagaa
tttgagggtgagatgaaactcttgtcttctaaagtcaagccagagacttatgactcaaat
gtcattacccctggcactccatttatgggagtgctgtcagtggctcttcagtattatata
cagactagattgaactacaaccctggctggcggaatacaaaggttatactttctgattca
aatgttcctggtgagggagaacataaaataatggattacatacgattacagcgtaacctt
cctgggtttaatccaaatactcgtcactgtttgtatggattggatgctgatttgattatg
ttgtccttagccacacatgaggttcatttctcaatattgagggaggtaatcactttccct
ggacaacaggagaagtgttttcagtgtggccaagttggccattttgcagctgaatgtcgt
ggtaagccaggtgagaaagctgaggactggaatccagttgatgataccccaattcacaag
aagaaatatcagtttcttaacatctgggtgctgcgtgaatatttgcaatatgaaatggag
attcccaaccctccttttgagattgactttgaacgcattgtggatgattttgtatttcta
tgcttctttgttggcaatgactttcttccacatatgccaacattagagatccgtgagggg
gctgtaaatttattgatgcatatttatagaaaagaattcaccgccatgggtggttatctt
actgaagcgggtgaggttttcttagagagagtagaacattttattcagtctgttgctgtt
catgaagatcaaatatttctgaaacgagttcggattcaacaggctacagaaattaatgaa
gagatgaaagctagggcaagaggagagatgcctggagaaccacgggcatcagttttggac
aaggttaagttaggagagcctggatacaaggaaaggtattatgctgaaaaatttggtgca
ttggatctggagaagattgaaaaaatcaagaaagatacagtcttaaaatatgtagaaggc
ctttgttgggtttgtcggtactactaccagggtgtctgctcatggcaatggtactaccca
taccattatgctccttttgcttctgatcttaaagatctagctgatctggagataactttt
tttttgggagaaccatttaaaccatttgatcagctaatggggaccctacccgcttcaagt
tcaagtgcacttcctgaaaaatatagggatttgatgattgatccttcatcacctattctt
caattctaccctgctgattttgagattgatatgaatggaaaacgatttgcatggcagggt
gttgccaagttgccattcattgatgagaagaaattgctttctgccacaagcaagcttgaa
gccacattaacggaggaagaacagctccgaaatagcaagatgcttgatttgctttatgtc
agcagtgcgcataatttggctccacatatcttatcatatcatcaatattcttgtcaattg
cctctacatgaaagacctgctctaccaattgacccaagagctagtgatggtatgaatgga
tatctctggttgtacgaaaggaatgtgctcagaaccactgtatcttctcccatcaaggga
ttgcaagacattgagtttaatcaagttttaaatattacttatctcaatcctcgtaaacat
agacatattccaaaacctccggatggtgtactaatgccaaaaaagatattaaaagccatt
gacattaaaccttttcctgtgttatggcacgaagacaatagtggtcggcgacaaggcagg
gaaagacaacaagtacatggagcaatggctggccctcaactgggagaagcagcacatcgt
cttgtcaagaactcccttaatattaaatcaaataacatgccgtatggatcaccggagcag
tttccaggccatcatgcaatgaaccggctcagatcagctggaccttctggatctgggaaa
tattatggtgaggacacaagcggttattacggacaacattacaatcaccaggggataata
actaggcctagatatccagtctcatctaatggtggacataatgacaaacagaattttagg
atacaggataggtcatatcatcatgatcaatactacaacgggacaactgggttttatacc
atggcaatggaggaaggtgcaagagctaggccatatgcagtgcctttgccaaggacacct
gcagtgacgttatcgaggcctcccaattcagggtcaacaactaatggacaacaccaattt
gtgcagaacatgggtcctcctataccacctccaaattggattactagagtaccggatacg
aatggaatatatgctgggcatcaagaaactgcattggggggaacttatgataagcagaac
atgaaggtgtaccaagttaaaactcgtcaaccccaagatatgccagagtacgggaatcaa
tga
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