Glycine max (soybean): 100793385
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Entry
100793385 CDS
T01710
Name
(RefSeq) 5'-3' exoribonuclease 4 isoform X2
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
gmx
Glycine max (soybean)
Pathway
gmx04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
100793385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmx03019
]
100793385
Messenger RNA biogenesis [BR:
gmx03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
100793385
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
100793385
NCBI-ProteinID:
XP_003554686
UniProt:
I1NC68
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All DBs
Position
19:49539461..49551854
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AA seq
957 aa
AA seq
DB search
MGVPAFYRWLADRYPLSITDVVEEDPSAGAVDVSKPNPSGMEFDNLYLDMNGIIHPCFHP
DGKPAPATYEDVFKSIFDYIDHIFSLVRPRKLLYLAIDGVAPRAKMNQQRSRRFRAAKDA
AEKDAAEAEAEIERLREEFEGEMKLLSSKDKPETYDSNVITPGTPFMGVLSVALQYYIQT
RLNYNPGWWNTKVILSDSNVPGEGEHKIMDYIRLQRNLPGFNPNTRHCLYGLDADLIMLS
LATHEVHFSILREVITFPGQQEKCFQCGQLGHFAAECRGKPGEKAEDWNPVDDTPIHKKK
YQFLNIWVLREYLQYEMEIPNPPFEIDFERIVDDFVFLCFFVGNDFLPHMPTLEIREGAL
NLLMHIYRKEFTAMGGYLTEAGEVFLERVEHFIQSVAVHEDQIFQKRVRIQQATEINEEM
KARARGDMPGEPRASVLDKVKLGEPGYKERYYAEKFGALDPEKIDKIKKDTVLKYVEGLC
WVCRYYYQGVCSWQWYYPYHYAPFASDLKDLADLEITFFLGEPFKPFDQLMGTLPASSSS
ALPKKYRDLMIDPSSSILQFYPADFEIDMNGKRFAWQGVAKLPFIDEKKLLSATSKLEAT
LTEEEQLRNSKMLDLLYVSSAHNLAPHILSYYQYSCQLPLHERPAQPIDPRVSDGMNGYL
WLYERNVLRTIVSSPIKGLQDIEFNQVLNITYLNPRKHRHIPKAPDGVLMPKKILKAIDI
KPFPVLWHEENSGRRQGRERQVHGAMAGPQLGEAAHRLVKNSLNIKSNNMPYGSPEQFPG
HHAMNRLRSAGPSGYGKYYVEDKSGYYGQQNNHQGMITRPRYPVSSNGGNNEKQNFRIQD
RSQHHEQYYNGRTGFHTMTMEEGARPRPYAVPSPRTQVVMLSRSPNSGPTTNGQHQFVQN
MGPPIPPPNWITRAPDTNGIYAWHQETALGGAYDKQHIKVYQAKTRQPQDMPEYGNQ
NT seq
2874 nt
NT seq
+upstream
nt +downstream
nt
atgggagtgccagcgttttaccggtggctcgcggatcggtacccgctctcgatcaccgac
gtcgtggaggaggatccctctgccggcgccgttgatgtgtctaaacctaatcccagtggc
atggagttcgacaacttgtacttggacatgaacggcatcattcacccctgttttcaccct
gatggcaagccagcacccgctacctacgaagatgtattcaaatcaatctttgactacatt
gaccatatattttcattggttcgcccaaggaagcttctttatcttgcaatcgatggtgtt
gcaccaagagccaaaatgaatcaacaacgttcacggcgtttccgagccgcaaaagatgca
gctgagaaagacgcagctgaggctgaagctgaaattgaaagacttagggaagaatttgag
ggtgagatgaaactcttgtcttctaaagacaagccagagacttatgattcaaatgtcatt
acccctggcactccatttatgggagtgctgtcagtggctcttcagtattatatacagact
agattgaactacaaccctggctggtggaatacaaaggttatactttctgattcaaatgtt
cctggtgagggagaacataaaataatggattacatacgattacagcgtaaccttcctggg
tttaatccaaatactcgtcactgtttgtatggattggatgctgatttaattatgttgtcc
ttagccacacatgaggttcatttctcaatattgagggaggtaatcactttccctggacaa
caggagaagtgttttcagtgtggccaacttggccattttgcagctgaatgtcgtggtaag
ccaggtgagaaagctgaggactggaatccagttgatgataccccaattcacaagaagaaa
tatcagtttcttaacatctgggtgctgcgtgaatatttgcaatatgaaatggagattccc
aaccctccttttgagattgactttgaacgcatagtggatgattttgtatttctatgcttc
tttgttggcaatgactttcttccacatatgccaacattagagatccgtgagggggcttta
aatttattgatgcatatttacagaaaagaattcaccgccatgggtggttatcttactgaa
gcgggtgaggttttcttagagagagtagaacattttattcagtctgttgctgttcatgaa
gatcaaatatttcagaaacgagttcggattcaacaggctacagaaattaatgaagagatg
aaagctagggcaagaggagacatgcctggagaaccacgtgcttcagttttggacaaggtt
aagttaggagagcctggatacaaggaaaggtattatgctgaaaaatttggtgcattggat
ccggagaagattgacaaaatcaagaaagatacagtcttaaaatatgtagaaggcctttgt
tgggtttgtcggtactactaccagggtgtctgctcatggcaatggtactacccataccat
tatgctccttttgcttctgatcttaaagatctagctgatctggagataacattttttttg
ggagaaccatttaaaccatttgatcagctaatggggaccctacccgcttcaagttcaagt
gcactgcctaaaaaatatagggatttgatgattgatccttcatcatctattcttcaattc
taccctgctgattttgagattgacatgaatggaaaacgatttgcatggcagggtgttgcc
aagttgccattcattgatgagaagaaattgctttctgccacaagcaagcttgaagccaca
ttaacggaggaagaacagctccgaaatagtaagatgcttgatttgctctatgtcagcagt
gcgcataatttggctccacatatcttatcatattatcaatattcttgtcaattgcctctg
catgaaagacctgctcaaccaattgatccaagagttagtgatggtatgaatggatatctc
tggttgtatgaaaggaatgtgctcagaaccattgtatcctctcctatcaagggattgcaa
gacattgagtttaatcaagttttaaacattacttatcttaatcctcgtaaacatagacat
attccaaaagctccggatggtgtactaatgccaaaaaagatattaaaagccattgatatt
aaaccttttcctgtgttatggcatgaagagaatagtggtcggcgacaaggcagagaaaga
caagtacatggagcaatggctggccctcaactgggagaagcagcacatcgtcttgtcaag
aactcccttaacattaaatcaaataacatgccgtatggatcaccggagcagtttcctggc
catcatgcaatgaaccggctcagatcagctggcccttctggatatggaaaatattatgtc
gaggacaaaagtggttattacggacaacaaaacaatcaccaggggatgataactaggcct
agatatccggtctcatctaatggtggaaataatgagaaacagaattttaggatacaggat
aggtcacagcatcatgaacagtactacaacgggagaactgggtttcatactatgacaatg
gaggaaggtgcaagacctaggccatatgcagtgccttcgccaaggacacaggtggtgatg
ttatcgaggtcacccaattcagggccaacaactaatggacaacaccaatttgtgcagaac
atgggtcctcctataccacctccaaattggattactagagcaccagatacgaatggaata
tatgcttggcatcaagaaactgcattgggaggagcttatgataagcagcacataaaggtg
taccaagctaaaactcgacaaccccaagacatgccagagtacgggaatcaatag
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