Glutamicibacter mysorens: XH9_04380
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Entry
XH9_04380 CDS
T08403
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gmy
Glutamicibacter mysorens
Pathway
gmy03030
DNA replication
gmy03410
Base excision repair
gmy03420
Nucleotide excision repair
gmy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gmy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
XH9_04380 (ligA)
03410 Base excision repair
XH9_04380 (ligA)
03420 Nucleotide excision repair
XH9_04380 (ligA)
03430 Mismatch repair
XH9_04380 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gmy03032
]
XH9_04380 (ligA)
03400 DNA repair and recombination proteins [BR:
gmy03400
]
XH9_04380 (ligA)
Enzymes [BR:
gmy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
XH9_04380 (ligA)
DNA replication proteins [BR:
gmy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
XH9_04380 (ligA)
DNA repair and recombination proteins [BR:
gmy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
XH9_04380 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XH9_04380 (ligA)
MMR (mismatch excision repair)
DNA ligase
XH9_04380 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
XH9_04380 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
PGRL1_N
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
UTM48054
LinkDB
All DBs
Position
complement(947310..949586)
Genome browser
AA seq
758 aa
AA seq
DB search
MSEKDAAPVETANVPPEADKTRYEQLVEQIRAHREAYYQNDAPLVSDAEYDALFQELQLL
EATYPILAGQDSPTQEVGGEASAAFASVTHASRMYSLEDVFSLDELDAWLERAQANAERL
HPQTPVKWLCEVKIDGLALNLTYREGKLIRAATRGDGTTGEDVTHNALTISDIPQQLSGS
GWPAEFEVRGEVFIATEDFNKFNEALIAQGKAPLANPRNAAAGSLRQKDPEQTAKRPLRM
FVHGLGRSRDFNLTEQSQAYELMRSWGLPVSPYGRVVGSRQEAKDYIAEHGEKRHDLIHD
IDGIVIKVDDLATQEQLGYTSRVPRWAVAYKYPPEEVHTKLLDIQVQVGRTGRVTPFGVM
EPVLVAGSTVARATLHNQEVVKAKNVKIGDTVILRKAGDVIPEIVGPVLPLRDGNEDLRD
FVMPTECPSCGQPLAPAKEGDVDIRCLNAESCPAQLTERVAYLAGRSALDIEALGYEAAA
ALTSGPGEDPATQGGVILPAGPGPLKNEADLFNLKDKLDELGEVKVWREKRSKGEGTGKY
ELVPYFYSKATAKKPSVPTKSTLKLLDELEKAKGNPLWRVLVALSIRHVGPNASRAIATR
YGSMDALLQVLDSGNAVAELAEIDSVGTIIAEALVDWFAVDWHREIVSSWQASGVQMEDE
QDANITKNLEGLAIVVTGTLENYSRDTAKEAIIVRGGKATGSVSKKTDFLVAGESAGSKL
DKAQSLGVPVLDEAGFGILLEQGPEAARKAALAAPTEG
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgaaaaagacgcagcaccagtcgagaccgccaacgtaccgccggaagctgacaag
acccgctatgaacagctggtcgagcagatccgcgcccaccgcgaggcctattaccaaaat
gatgctcccctggtctccgacgcagaatacgacgcgttattccaggagctccagctgctc
gaggcgacctatcccatccttgctggacaggactcgcctacccaggaagtcggcggcgaa
gcctccgccgccttcgcatcggtcacccacgccagccggatgtactcgctggaagacgtt
ttctcgcttgatgaactcgacgcgtggctggaacgagcacaggccaacgccgaacgcctg
cacccgcagaccccggtcaaatggctgtgcgaagtcaaaatcgacggcctggcactgaac
ctgacctaccgcgagggcaagctgattcgcgcggccacccgcggggacggcaccaccgga
gaagacgtgacccacaatgcgctgaccatcagcgatatcccgcaacagctgtccggctcc
ggctggcctgcggaattcgaagtccgcggcgaagtcttcatcgccaccgaggacttcaac
aagttcaatgaggcactgattgcccagggcaaggcgccgctggccaacccgcgcaacgcc
gccgccgggtccttgcgccagaaggatccggagcagaccgccaagcgtccgctgcgcatg
ttcgtgcatggcctgggccgcagccgcgatttcaacctgaccgagcagtcccaggcctat
gagctgatgcgcagctggggcctgccggtctctccgtacggccgtgtggtcggcagccgc
caggaagccaaggactatatcgccgagcacggcgagaagcgccatgatttgatccacgac
atcgatggcattgtcatcaaggtcgatgacctggccacccaggaacagctgggctacacc
tcccgggttccgcgctgggccgtcgcctacaagtacccgcccgaagaagtgcacaccaag
ctgctggacatccaggtccaggtgggccgcaccggccgcgtgacccccttcggcgtgatg
gaaccagtcctcgtcgccggctccaccgtcgcgcgcgcgactttgcacaaccaggaagtc
gtcaaggcgaaaaacgtcaaaatcggcgacaccgtcatcctgcgcaaggccggagacgtc
atcccggagattgtcggcccggtgctcccgctgcgcgatggcaacgaggacctgcgtgat
ttcgtcatgcccaccgaatgcccttcctgcgggcaaccgctggccccggccaaggaaggc
gacgtggatatccgttgcctcaacgccgaatcctgcccggcacagctcaccgagcgcgtg
gcataccttgccggacgcagtgcactggacatcgaagccctcggctacgaagcggcagct
gccctgaccagcggtccgggcgaggacccggccacccagggcggcgtcatcctgcccgcc
ggacccggcccgctgaagaacgaggccgacctgttcaacctcaaggacaagctcgacgag
cttggagaagtcaaggtctggcgggaaaagcgctccaagggggagggcaccggcaagtac
gagctcgtcccgtacttctattccaaagccaccgccaagaagccttcggtgccgaccaag
agcaccctgaagctgcttgatgagctggagaaagccaagggcaacccgctgtggcgggtg
ctggtagccctctccatccgccacgtcggcccgaacgcctcgcgggccattgccacccgc
tacggctccatggacgcccttcttcaggtccttgactcgggcaacgcggtggcggaactg
gccgaaatcgattcggttggcacaatcatcgccgaagcgctggttgactggttcgcggtg
gattggcaccgcgagatcgtctcctcctggcaggcctccggcgtgcagatggaagacgag
caggatgcgaacatcaccaagaacctcgaaggcctggccatcgtggtgaccggtaccctg
gagaactattcccgggataccgccaaggaagcgatcattgtccgtggcggcaaggccacc
ggcagcgtctcgaagaagacagacttcctggtggccggcgaatccgccgggtcgaagctg
gacaaagcccagtccctgggcgttccggtactggacgaagccggattcggcatcctgctg
gagcaaggaccagaagcagcacgcaaggcagcactcgccgcaccaacggaaggctag
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integrated database retrieval system
