Glutamicibacter nicotianae: QQS42_04490
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Entry
QQS42_04490 CDS
T09135
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gnc
Glutamicibacter nicotianae
Pathway
gnc03030
DNA replication
gnc03410
Base excision repair
gnc03420
Nucleotide excision repair
gnc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gnc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QQS42_04490 (ligA)
03410 Base excision repair
QQS42_04490 (ligA)
03420 Nucleotide excision repair
QQS42_04490 (ligA)
03430 Mismatch repair
QQS42_04490 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gnc03032
]
QQS42_04490 (ligA)
03400 DNA repair and recombination proteins [BR:
gnc03400
]
QQS42_04490 (ligA)
Enzymes [BR:
gnc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QQS42_04490 (ligA)
DNA replication proteins [BR:
gnc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QQS42_04490 (ligA)
DNA repair and recombination proteins [BR:
gnc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QQS42_04490 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QQS42_04490 (ligA)
MMR (mismatch excision repair)
DNA ligase
QQS42_04490 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QQS42_04490 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
WIV44870
LinkDB
All DBs
Position
947993..950269
Genome browser
AA seq
758 aa
AA seq
DB search
MSEKDAAPVETANVPPEADKTRYEQLVEQIRAHREAYYQNDAPLVSDAEYDALFQELQLL
EATYPILAGQDSPTQEVGGEASAAFASVTHASRMYSLEDVFSLDELDAWLERAQANAERL
HPQTPVKWLCEVKIDGLALNLTYREGKLIRAATRGDGTTGEDVTHNALTISDIPQQLSGS
GWPAEFEVRGEVFIATEDFNKFNEALIAQGKAPLANPRNAAAGSLRQKDPEQTAKRPLRM
FVHGLGRSRDFNLTEQSQAYELMRSWGLPVSPYGRVVGSRQEAKDYIAEHGEKRHDLIHD
IDGIVIKVDDLATQEQLGYTSRVPRWAVAYKYPPEEVHTKLLDIQVQVGRTGRVTPFGVM
EPVLVAGSTVARATLHNQEVVKAKNVKIGDTVILRKAGDVIPEIVGPVLPLRDGNEDLRD
FVMPTECPSCGQPLAPAKEGDVDIRCLNAESCPAQLTERVAYLAGRSALDIEALGYEAAA
ALTSGPGEDPATQGGVILPAGPGPLKNEADLFNLKDKLDELGEVKVWREKRSKGEGTGKY
ELVPYFYSKATAKKPSVPTKSTLKLLDELEKAKGNPLWRVLVALSIRHVGPNASRAIATR
YGSMDALLQVLDSGNAVAELAEIDSVGTIIAEALVDWFTVDWHREIVSSWQASGVQMEDE
QDANITKNLEGLAIVVTGTLENYSRDTAKEAIIVRGGKATGSVSKKTDFLVAGESAGSKL
DKAQSLGVPVLDEAGFGILLEQGPEAARKAALAAPTEG
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgaaaaagacgcagcaccagtcgagaccgccaacgtaccgccggaagccgacaag
acccgctatgaacagctggtcgagcagatccgcgcccaccgcgaggcctattaccaaaat
gatgctccgctggtctccgacgcggaatacgacgcgttattccaggagctccagctcctc
gaggcgacctatcccatccttgctggacaggactcgcccacccaggaagtcggcggcgaa
gcctccgcagcgttcgcatcggtcacccacgccagccggatgtactcgctggaagacgtt
ttctcgcttgatgaactcgacgcgtggctggaacgagcacaggccaacgccgaacgcctg
cacccgcagaccccggtcaaatggctgtgcgaagtcaaaatcgacggcctggcactgaac
ctgacctaccgcgagggcaagctgattcgcgcggccacccgcggcgacggcaccaccgga
gaagacgtgacccacaacgcgctgaccatcagcgatatcccgcaacagctgtccggctcc
ggctggcctgcggaattcgaagtccgcggcgaagtcttcatcgccaccgaggacttcaac
aagttcaatgaggcactgattgcccagggcaaggcgccgctggccaacccgcgcaacgcc
gccgccgggtccttgcgccagaaggatccggagcagaccgccaagcgtccgctgcgcatg
ttcgtgcatggcctgggccgcagccgcgatttcaacctgaccgagcagtcccaggcctat
gagctgatgcgcagctggggcctgccggtctctccgtacggccgtgtggtcggcagccgc
caggaagccaaggactacatcgccgagcacggcgagaagcgccatgatttgatccacgac
atcgatggcattgtcatcaaggtcgatgacctggccacccaggaacagctgggctacacc
tcgcgggttccgcgctgggccgtcgcctacaagtacccgcccgaagaagtgcacaccaag
ctgctggacatccaggtccaggtgggccgcaccggccgcgtgacccccttcggcgtgatg
gaaccagtcctcgtcgccggctccaccgtcgcgcgcgcgactttgcacaaccaggaagtc
gtcaaggcgaaaaacgtcaaaatcggcgacacagtcatcctgcgcaaggccggagacgtc
atcccggagattgtcggcccggtgctcccgctgcgcgatggcaacgaggacctgcgtgat
ttcgtcatgcccaccgaatgcccttcctgcgggcagccgctggccccggccaaggaaggc
gacgtggatatccgttgcctcaacgctgaatcctgcccggcacagctcaccgagcgcgtg
gcctaccttgccggacgcagtgcactggacatcgaagccctcggctacgaagcggctgct
gccctgaccagcggtccgggcgaggacccggccacccagggcggcgtcatcctgcccgcc
ggacccggcccgctgaagaacgaggccgacctgttcaacctcaaggacaagctcgatgag
cttggcgaggtcaaggtctggcgggaaaagcgctccaagggggagggcaccggcaagtac
gagctcgtaccgtacttctattccaaggccaccgccaaaaagccttcggtgccgaccaag
agcaccctgaagctgcttgatgagctggagaaggccaagggcaacccgctgtggcgggtg
ctggtagccctgtccatccgccacgtcggcccgaacgcctcgcgggccattgccacccgc
tacggctccatggacgccctgcttcaggtcctggactcgggcaacgcggtggcggaactg
gccgaaatcgattcggttggcaccatcatcgccgaagcgctggttgactggttcacggtg
gattggcaccgcgagatcgtctcctcctggcaggcctccggcgtgcagatggaagacgag
caggatgcgaacatcaccaagaacctcgaaggcctggccatcgtggtgaccggtaccctg
gagaactattcccgggataccgccaaggaagcgatcattgtccgtggcggcaaggccacc
ggcagcgtctcgaagaagaccgacttcctggtggccggcgaatccgccgggtcgaagctg
gacaaagcccagtccctgggcgttccggtactggacgaagccggattcggcatcctgctg
gagcaaggaccggaagcagcacgcaaggcagcactcgccgcaccaacggaaggctag
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integrated database retrieval system
