Brumicola nitratireducens: GNIT_2055
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Entry
GNIT_2055 CDS
T01632
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gni
Brumicola nitratireducens
Pathway
gni03030
DNA replication
gni03410
Base excision repair
gni03420
Nucleotide excision repair
gni03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gni00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GNIT_2055
03410 Base excision repair
GNIT_2055
03420 Nucleotide excision repair
GNIT_2055
03430 Mismatch repair
GNIT_2055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gni03032
]
GNIT_2055
03400 DNA repair and recombination proteins [BR:
gni03400
]
GNIT_2055
Enzymes [BR:
gni01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GNIT_2055
DNA replication proteins [BR:
gni03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GNIT_2055
DNA repair and recombination proteins [BR:
gni03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GNIT_2055
NER (nucleotide excision repair)
GGR (global genome repair) factors
GNIT_2055
MMR (mismatch excision repair)
DNA ligase
GNIT_2055
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GNIT_2055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
DZR_2
Motif
Other DBs
NCBI-ProteinID:
AEP30164
UniProt:
G4QLQ8
LinkDB
All DBs
Position
complement(2277958..2279985)
Genome browser
AA seq
675 aa
AA seq
DB search
MTELNKVKAHIDALKSQLEEHNYQYYVMDAPSIPDAEYDRLMRELITLEKQNPALISADS
PSQKVGGTPLSKFDTVVHEVPMLSLDNGFEASDLTAFEKRLQDRLLSFSDIQFSCEPKLD
GLAASILYENGILTRAATRGDGQVGEDITKNVKTIANVPIKLRGENIPSKVEVRGEVFMP
KAGFEKLNETQKKAGNKLFANPRNAAAGSLRQLDSRITAKRPLLFYAYSMGVIEGESLTD
LPLHTERLAALGKWGIPLCKESAIANGAEECIAYFTKIGQMRNSLPYDIDGVVFKVNDIN
LQQRLGFVSKAPRWAIAQKFPAQEELTTLLDVEFQVGRTGAITPVARLEPVFVGGVTVSN
ATLHNQDEIARLGVKIGDKVVIRRAGDVIPQVVSVVLEKRTDDVRDIVFPTHCPVCHSHI
ERTESEAVARCTGGLVCAAQRKESIKHFASRKALDIDGLGDKIVEQLVDANMIKNPADLF
RLNMPKLLSVERMGDKSAVNLLNAIEKSKQTTLPKFLYSLGIREVGESTARNLALHYLTL
ERIMQADIESLVEVQDVGAIVAQHVFHFMREPHNVDIINDLFELGIHWPEIQPASLDEQP
FAGKTIVLTGTLSQMGRSEAKAKLQELGAKVSGSVSAKTDLLIAGEKAGSKLSKAESLNI
EVWNEAQMVAFFEQL
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgactgaactaaataaagtgaaagcgcacattgatgcgcttaaatcgcagctagaagaa
cacaattaccaatactacgttatggatgcacccagcattcctgatgcagaatatgatcga
ttaatgcgggagcttattactcttgaaaagcaaaatccagccttaatcagtgccgattct
ccgagtcaaaaagtaggcggcacgccattatctaaatttgatacagttgtgcatgaagtc
ccgatgctgtcgcttgacaacggctttgaagcgtctgatttgactgcatttgaaaaacga
ctgcaagacagattactttcattttctgacattcagttcagctgtgaacccaaacttgat
ggcttagctgcctctattctttatgaaaacggcatactcaccagagctgcaacaaggggt
gacgggcaagttggtgaagatattacaaagaatgtcaaaaccattgccaacgtgcccatt
aagctgcgcggggaaaatataccgagtaaagtcgaagtccgaggcgaagtgtttatgccg
aaagcgggttttgagaagctcaatgagacacaaaagaaagccggaaataaactattcgct
aatccaagaaatgcggcggcaggcagcttgcgtcaacttgattcgcgaattacggcgaaa
cgaccgctactgttttatgcctatagtatgggcgttattgagggggagagtcttaccgac
ctgccgttgcataccgaacgactagccgcactcggtaagtggggcatccctttatgtaaa
gagtctgcgattgctaatggcgccgaagagtgtattgcctattttacgaaaataggtcag
atgcgcaattcgctaccatatgacattgatggtgttgtgtttaaagtcaacgatattaac
ttacagcagcgtctgggcttcgtttcaaaggcgccgcgctgggccattgcacaaaagttt
ccagcgcaagaggaattaaccaccttactcgacgttgagtttcaagttggccgcacaggc
gcgattacccctgtggctaggttagaaccagtttttgtcggtggagttaccgtatctaat
gcgacgctgcacaatcaagatgaaattgctcgtttgggcgttaaaatcggtgacaaagtg
gttattcgacgtgcgggagatgtgatcccgcaggttgtgtctgttgttttagaaaaacgc
acagatgatgttcgtgatatcgttttccccacgcattgccctgtttgtcattcgcacatc
gagagaacggaatcagaggccgttgctagatgtactggcggtctggtctgcgcggcacaa
cgaaaggaatctattaagcattttgcttcgcgtaaagctctcgacattgatggtttagga
gacaaaatcgttgagcagctagtagacgcaaacatgattaaaaatcctgccgatttgttt
agattaaatatgcctaagttgctctcagtagagaggatgggggataagtccgctgttaac
ctcctcaacgcaatcgaaaagtcaaaacaaacaaccttgcctaagtttctctattctctg
ggaataagagaagtgggtgagtcaaccgcacgcaatttagcactacactatttgactcta
gaacggattatgcaagcagatatagaatcattggtagaagtgcaagatgttggtgccatt
gtagcgcagcatgttttccactttatgcgagagcctcacaacgtagatataatcaatgat
ttgtttgagctaggaattcattggcccgaaatacagccagcgtcactagatgaacagccg
tttgctggaaaaacgattgtgctaaccggaacgttatcgcaaatgggccgaagcgaggct
aaggcgaagctacaggaactgggcgcaaaagtgtcgggcagtgtatcggctaaaacggat
ctgctaattgctggcgaaaaagcgggttcaaagttgagtaaggctgaatcgttgaatata
gaggtttggaatgaagctcagatggtggcttttttcgagcaactttaa
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