Geodermatophilus obscurus: Gobs_4086
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Entry
Gobs_4086 CDS
T01163
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gob
Geodermatophilus obscurus
Pathway
gob03030
DNA replication
gob03410
Base excision repair
gob03420
Nucleotide excision repair
gob03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gob00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Gobs_4086
03410 Base excision repair
Gobs_4086
03420 Nucleotide excision repair
Gobs_4086
03430 Mismatch repair
Gobs_4086
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gob03032
]
Gobs_4086
03400 DNA repair and recombination proteins [BR:
gob03400
]
Gobs_4086
Enzymes [BR:
gob01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Gobs_4086
DNA replication proteins [BR:
gob03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Gobs_4086
DNA repair and recombination proteins [BR:
gob03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Gobs_4086
NER (nucleotide excision repair)
GGR (global genome repair) factors
Gobs_4086
MMR (mismatch excision repair)
DNA ligase
Gobs_4086
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Gobs_4086
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
HHH
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
ADB76651
UniProt:
D2SEL5
LinkDB
All DBs
Position
complement(4288296..4290446)
Genome browser
AA seq
716 aa
AA seq
DB search
MTTDAELDEPQVEAPTEREDLTEVPDDARTRHRDLSEELDRYAFAYYVQDAPLVSDGQYD
ELMGELKSIEAAHPALVTPDSPSQKVNGGFAATFAPVKHLERMQSLDNAFSSDELSAWAA
RVEREVGSAAVYLCELKVDGVAVDLVYERGRLLRAATRGDGVTGEDVTANVRTMDDVPQQ
LSGDDVPPLLEVRGEIYFPVEAFAEVNAGQVADGKPPFANPRNAAAGSLRQKDARVTASR
PLRLVVHGLGAREGFSPERQSEAYARLRELGLPVSDRVEVLDDLEGVWAYIERYREQRHS
VEHEIDGVVVKVDQVALQRRLGSTSRAPRWAIAFKYPPEEATTKLLDIRVNVGRTGRVTP
FAYMEPVKVAGSTVQLATLHNASEVKRKGVLIGDTVVIRKAGDVIPEVLGPVVAARTGDE
REFEMPTHCPECGTELRHEKEGDADIRCPNARSCPAQLRERVFHVAGRGAFDIENLGYEA
GIALLQEHLIEDEGDVFSLDEEKLERTAFFTKKDGALSANGRKLLTNLQTRKDVPLWRVL
VALSIRHVGPTAAQALARDFRSLDRIAEASEEELAAADGVGPTIARSVKEWFAVDWHRGV
VEKWRAAGVRMADEGEDAGPGPLTGVAVVVTGSLRDHSRDQAIAAIQERGGKVTGSVSKK
TGFVVVGADPGSKYDKAVQVKAPILDDDGFRVLLEEGPEAARAVATIGDGSDASGV
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
gtgaccaccgacgccgagctggacgagccccaggtcgaggccccgaccgagcgggaggac
ctcaccgaggtccccgacgacgcgcggacccggcaccgcgacctgtccgaggagctcgac
cggtacgcgttcgcctactacgtgcaggacgcgccgctggtcagcgacggccagtacgac
gagctcatgggcgagctcaagtcgatcgaggccgcccacccggcgctggtcacgccggac
tcgccgagccagaaggtcaacggaggcttcgccgccaccttcgccccggtgaagcacctg
gagcggatgcagagcctggacaacgcgttctccagcgacgagctgtccgcgtgggcggcc
cgggtcgagcgcgaggtcggctcggcggcggtctacctgtgcgagctcaaggtcgacggc
gtcgcggtcgacctggtctacgagcgcggccggctgctccgcgcggccacccggggggac
ggcgtcacgggggaggacgtcaccgccaacgtgcgcacgatggacgacgtcccgcagcag
ctgtccggcgacgacgtcccgccgctgctcgaggtgcgcggcgagatctacttcccggtc
gaggcgttcgccgaggtcaacgccgggcaggtcgccgacggcaagccgcccttcgccaac
ccgcgcaacgccgccgcgggctccctgcggcagaaggacgcacgggtcaccgcctcccgg
ccgctgcggctggtcgtgcacgggctcggcgcgcgcgaggggttcagcccggagcggcag
tcggaggcctacgcccggctccgcgagctgggcctgccggtcagcgaccgcgtcgaggtg
ctcgacgacctcgagggcgtgtgggcctacatcgagcgctaccgcgagcagcggcactcg
gtggagcacgagatcgacggcgtggtcgtcaaggtcgaccaggtggcgctgcagcgccgg
ctgggctcgacctcgcgcgccccgcggtgggcgatcgccttcaagtacccgccggaggag
gccaccaccaagctgctggacatccgggtcaacgtcgggcgcaccgggcgggtcacgccg
ttcgcgtacatggaaccggtgaaggtcgccgggtcgacggtgcagctggccaccctgcac
aacgccagcgaggtcaagcgcaagggcgtgctgatcggcgacaccgtcgtcatccgcaag
gccggcgacgtgatccccgaggtgctgggcccggtggtcgccgcccgcaccggcgacgaa
cgcgagttcgagatgcccacgcactgcccggagtgcggcacggagctgcggcacgagaag
gagggcgacgccgacatccgctgcccgaacgcccggtcctgccccgcacagctgcgggag
cgggtgttccacgtcgccggccgcggggcgttcgacatcgagaacctcggctacgaggca
ggcatcgcgctgctgcaggagcacctcatcgaggacgagggcgacgtcttctccctcgac
gaggagaagctggagcgcacggcgttcttcaccaagaaggacggcgccctctcggccaac
ggccgcaagctgctgaccaacctgcagacccgcaaggacgtcccgctgtggcgggtgctg
gtcgccctgtccatccggcacgtcggcccgaccgccgcgcaggcgctggcccgcgacttc
cgctcgctcgaccggatcgccgaggcgtccgaggaggagctggccgctgccgacggggtc
gggccgacgatcgcccggtcggtcaaggagtggttcgccgtcgactggcaccgcggggtc
gtcgagaagtggcgggcggccggggtgcggatggccgacgagggggaggacgccgggccg
ggtccgctgaccggggtggccgtcgtcgtgaccggttcgctgcgcgaccacagccgcgac
caggcgatcgccgccatccaggagcgcggcggcaaggtgaccggctcggtgagcaagaag
accggcttcgtcgtcgtcggcgccgacccgggcagcaagtacgacaaggcggtgcaggtc
aaggcgccgatcctggacgacgacggcttccgggtgctgctggaggagggcccggaggcg
gcccgcgcggtggcgacgatcggcgacggcagcgacgcgagcggggtctga
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