Gordonia sp. YC-JH1: CXX93_08750
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Entry
CXX93_08750 CDS
T05256
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
goc
Gordonia sp. YC-JH1
Pathway
goc03030
DNA replication
goc03410
Base excision repair
goc03420
Nucleotide excision repair
goc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
goc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CXX93_08750
03410 Base excision repair
CXX93_08750
03420 Nucleotide excision repair
CXX93_08750
03430 Mismatch repair
CXX93_08750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
goc03032
]
CXX93_08750
03400 DNA repair and recombination proteins [BR:
goc03400
]
CXX93_08750
Enzymes [BR:
goc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CXX93_08750
DNA replication proteins [BR:
goc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CXX93_08750
DNA repair and recombination proteins [BR:
goc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CXX93_08750
NER (nucleotide excision repair)
GGR (global genome repair) factors
CXX93_08750
MMR (mismatch excision repair)
DNA ligase
CXX93_08750
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CXX93_08750
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
UPF0758_N
Motif
Other DBs
NCBI-ProteinID:
AUH70223
LinkDB
All DBs
Position
1900858..1902888
Genome browser
AA seq
676 aa
AA seq
DB search
MLAEEVRGHQFRYYVQDAPVISDGEFDSLLRRLQALEDEHPELAVPDSPTKLVGGGFSTD
FTSVDHLERMMSLDNVFDYDEMRTWVSRTEAEIGAGTEFLCELKIDGVALSLVYEKGTLV
RGVTRGDGRTGEDVTLNARTITDVPHDLDDSVRPVPELLEVRGEVFFRVEDFQNLNASLV
EEGKPPFANPRNSAAGSLRQKNPQVTARRRLRMICHGIGKVEGWRPESLHEAYLALGEWG
LPVSDHTKKVTGADEIIEAIAYWGENRHSVEHEIDGLVVKVDDVTRQRRLGATSRAPRWA
IAYKYPPEEVTTKLLDIMVGVGRTGRVTPWALMEPVLVAGSTVSRATLHNAFEVKRKGVL
IGDTITIRKAGDVIPEVLGPVVELRDGTEREFVMPTRCPECGTELAPAKEGDKDIRCPNQ
RYCPGQLRERLFYLAGRGAFDIEALGYEGAQALLSSGVLTDEGDLFSLTADDLVKTDLYT
TKSGALSANGRRFLDNLDKAKRVPLWRVIVALSIRHVGPTPARALATAFGDLESIQNASV
DELAQVDGLGPTRAASVHDWFAVDWHREIVAKWRAAGVAMADERDESIERTLDGKTIVVT
GSLVDFSRDGAKEAIIVRGGKASGSVSKKTDYVVVGDSPGSKAAKAEELGVPILDEDGFK
QLLATGSAGESESEDD
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
ctgctcgccgaggaggttcgcgggcatcagttccgctactacgtccaggacgcgcctgtg
atcagcgacggagagttcgactcgctgttgcgccggctgcaggcactcgaggacgagcat
cccgaactggcggtgcccgattcgccgacgaagctggtcggcggcggcttctcgaccgac
ttcacctcggtcgaccatctcgaacggatgatgtcgctcgacaacgtcttcgattacgac
gagatgcgcacctgggtctcgcgtaccgaagccgagatcggcgccgggaccgagttcctg
tgcgaactcaagatcgacggggtagcgctctcgctggtgtacgagaagggcacgctggtc
cggggagtgacccggggcgacggccgcaccggcgaggacgtgacactcaacgcgcgcacc
atcaccgacgttccgcacgatctcgacgattcggtgcgcccggtgcctgaactcctggag
gtccgcggtgaggtgttcttccgagtcgaagacttccagaatctgaacgcctccctcgtc
gaagaggggaagccgccgttcgcgaatccgcgcaactcggccgccggctctctgcgccag
aagaatccgcaggtcaccgcgcggcgccgactccggatgatctgtcacgggatcgggaag
gtggagggctggaggcccgagtcgctgcacgaggcctacctcgcgctgggcgagtggggg
ctgccagtctccgaccacacgaagaaggtgaccggggccgacgagatcatcgaggcgatc
gcgtactggggcgagaaccggcactcggtggaacacgagatcgacggcctcgtcgtcaag
gtggacgatgtgacgcgccagcgccggctgggtgcgacttcacgcgcaccgcgctgggcg
atcgcgtacaagtacccgccggaagaggtcacgaccaaactgctcgacatcatggtcggc
gtcggacggacgggccgcgtcacgccgtgggcgctgatggaaccggtgctggtcgcggga
tcgaccgtctcccgcgcgacactccacaacgccttcgaggtgaagcgtaaaggcgtcctg
atcggcgacaccatcaccattcgcaaggccggcgacgtgattcccgaggtgctcggtccg
gtcgtcgaactgcgcgacggtaccgaacgcgagttcgtgatgccgactcgatgccccgag
tgcggaaccgaactggcccccgcgaaggagggcgacaaggacatccgctgtcccaaccag
cgctactgcccgggacaactgcgcgaacggctgttctatctcgcgggccgcggcgcattc
gacatcgaagcgctcggatacgaaggggcgcaagcacttctgtcgagcggcgtgctgacc
gacgaaggcgacctgttctcgctcactgccgacgatctggtcaagaccgacctgtacacc
acgaagtcgggtgcgctctcggccaacggtcggcgattcctggacaacctcgacaaggcc
aagcgggtcccgctgtggcgggtgatcgtcgcgctgtcgatccgccacgtcgggcccacc
ccggcgcgggctctggccaccgctttcggcgacctcgaaagcatccagaacgcctccgtc
gacgagttggcgcaggtggacggtctcggccccacgcgggcggcgagcgtgcacgactgg
ttcgccgtcgactggcaccgcgagatcgtcgccaaatggcgtgccgcgggggtggccatg
gccgatgagcgggacgagtcgatcgagcggacgctcgacggcaagacgatcgtggtcacc
ggttcgctcgtcgacttctcccgcgacggagccaaagaggcgatcatcgtgcgcggcggc
aaggcgtcgggctcggtgtcgaagaagaccgactacgtcgtggtcggcgactcgcccggc
agcaaagccgccaaggccgaagaattaggcgttccgatcctcgacgaggacggcttcaaa
caattgctggcgaccgggtctgcgggagagtcggagtcggaggacgattga
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