Gordonia sp. 135: GKZ92_15835
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Entry
GKZ92_15835 CDS
T06305
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
god
Gordonia sp. 135
Pathway
god03030
DNA replication
god03410
Base excision repair
god03420
Nucleotide excision repair
god03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
god00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GKZ92_15835 (ligA)
03410 Base excision repair
GKZ92_15835 (ligA)
03420 Nucleotide excision repair
GKZ92_15835 (ligA)
03430 Mismatch repair
GKZ92_15835 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
god03032
]
GKZ92_15835 (ligA)
03400 DNA repair and recombination proteins [BR:
god03400
]
GKZ92_15835 (ligA)
Enzymes [BR:
god01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GKZ92_15835 (ligA)
DNA replication proteins [BR:
god03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GKZ92_15835 (ligA)
DNA repair and recombination proteins [BR:
god03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GKZ92_15835 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GKZ92_15835 (ligA)
MMR (mismatch excision repair)
DNA ligase
GKZ92_15835 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GKZ92_15835 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
DUF4796_N
Zn_ribbon_TFIIB
Zn_ribbon_3
Motif
Other DBs
NCBI-ProteinID:
QGP88976
LinkDB
All DBs
Position
complement(3490225..3492309)
Genome browser
AA seq
694 aa
AA seq
DB search
MAETTESGAIEQSGPEADLREEWAALAEEIRDHQFRYYVKDAPVITDGEFDELLRRLQDL
EERHPELATPDSPTKLVGGGFSTAFSPVDHLERMMSLDNVFDYEEMTSWVERVNSDASAE
AEFLCELKIDGVALALVYRNGVLERGVTRGDGRTGEDVSLNARTIEDIPQRLTASDEYPI
PDVLEVRGEVFFRGEDFEALNASLVADGKPPFANPRNSAAGSLRQKNPQVTARRKLRMIC
HGIGHTEGWRPESLHDAYLALGAWGLPVSTHTTKASGAAEILEKISYWGEHRHDVEHEID
GIVVKVDDFTLQRRLGSTSRAPRWAIAYKYPPEEATTKLRDIQVGVGRTGRVTPFAVLEP
VLVAGSTVSRATLHNGSEVKRKGVLIGDTVTIRKAGDVIPEVLGPVVDLRDGSEVEFEMP
ERCPECGTPLRPEKESDVDVRCPNQESCPAQLRERLFHLAGRGSFDIEALGYEAATALLS
AKVIRNEGDLFSITADDLARTDLFTTKAGALSANGNRLLANLDKAKDVALWRVLVGLSIR
HVGPTAARALATEFGSLEAIESADVEQLADVEGLGMTLAQSIHDWFTVDWHREIVEKWRA
AGVLMKDERDESIARTLEGKTIVVTGSLVDFSRDGAKEAILQRGGKASGSVSKKTDYVVV
GDSPGSKADKAEQLGVPVLDEDAFKRLLETGSPE
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
gtggcagaaacaacggagtcgggggccatcgagcagtcgggacccgaggcagacctgcgc
gaagagtgggcggctctcgccgaggagatccgcgaccatcagttccgttactacgtgaag
gatgcgccggtcatcaccgacggcgagttcgacgagctgctgcgccgcctgcaggatctc
gaggagcgccatcccgagctcgccacccccgattcgccgaccaagctcgtcggcggtggt
ttctcgaccgcattctccccggtcgaccatctcgagcggatgatgtcgctggacaacgtc
ttcgactacgaggagatgacctcctgggtcgagcgggtcaactccgacgccagcgccgag
gccgagttcctctgcgaactcaagatcgacggcgtcgcgctggcgctggtgtatcgcaac
ggtgtcttggaacgcggcgtcacccgcggcgacgggcgcaccggcgaggacgtctccctc
aacgcccgcaccatcgaggacatcccgcagcgcctcacggcctccgacgagtacccgatc
ccggacgtcctcgaggtgcgcggcgaggtcttcttccggggggaggatttcgaggcgctc
aacgcgtccctggtggccgacggcaagccgccgttcgccaatccccgcaattcggcggcc
ggttcgctgcgtcagaagaacccgcaggtcacggctcgtcgcaaactgcggatgatctgt
cacggtatcggtcacaccgagggctggcggccggagtcgctgcatgatgcgtatctcgcg
ctcggtgcatgggggctaccggtgtcgacgcacaccaccaaggcttcgggcgctgccgag
atcctcgagaagatctcctactggggcgagcaccgtcacgacgtcgagcacgagatcgac
ggcatcgtggtcaaggtcgacgacttcaccctgcagcgccgcctcggttccacctcgcgt
gcaccgcgatgggcgatcgcctacaagtacccaccggaggaggccaccaccaagctgcgc
gacatccaggtcggcgtcggacgcaccggtcgcgtcacaccgttcgcggtgctcgaacca
gtcctcgtcgccggctcgaccgtctcccgggccaccctgcacaacggctcggaggtcaag
cgcaagggcgtcctcatcggcgacaccgtgaccattcgcaaggccggcgacgtgatcccc
gaggtcctcggaccggtcgtcgacctgcgcgacggctccgaggtcgagttcgagatgccc
gagcgctgcccggaatgcggtacgccgttacgtccggagaaggaatccgacgtcgacgtc
cggtgcccgaatcaggagagttgcccggcacagttgcgggagcggctctttcacctcgcc
gggcgcggctctttcgacatcgaggcgctcggctacgaggcggcgaccgcgctgctgtcg
gccaaggtgatccgcaacgaaggagacctgttctccatcaccgccgacgatctcgcccgc
accgatctgttcacgacgaaggccggcgcgctgtcggcgaacggaaaccgtttgctggcc
aacctcgacaaggccaaggacgtcgcgctgtggcgggtgctggtgggtctgtcgatccgc
catgtcggtcccactgccgcgcgcgcgctggccaccgagttcggctcgctggaggccatc
gaatccgccgacgtcgaacaactggccgacgtcgagggcctcggcatgaccctcgcacaa
tcgatccacgactggttcaccgtcgactggcatcgcgagatcgtcgagaagtggcgtgcg
gcaggcgttttgatgaaggacgagcgtgacgagtcgatcgcgcgaacgctcgagggcaag
accatcgtcgtgaccggatcgctggtggacttctcccgtgacggcgccaaagaggcgatc
ctgcagcgcgggggcaaggcgtcgggttcggtgtcgaagaagaccgactacgtggtcgtc
ggcgattcgccgggaagcaaggccgacaaggccgaacaactcggcgtcccggtactcgac
gaggacgcgttcaagcgactgctggagaccggcagtcctgagtag
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