Gluconobacter oxydans H24: B932_2315
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Entry
B932_2315 CDS
T02348
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
goh
Gluconobacter oxydans H24
Pathway
goh03030
DNA replication
goh03410
Base excision repair
goh03420
Nucleotide excision repair
goh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
goh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
B932_2315
03410 Base excision repair
B932_2315
03420 Nucleotide excision repair
B932_2315
03430 Mismatch repair
B932_2315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
goh03032
]
B932_2315
03400 DNA repair and recombination proteins [BR:
goh03400
]
B932_2315
Enzymes [BR:
goh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
B932_2315
DNA replication proteins [BR:
goh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
B932_2315
DNA repair and recombination proteins [BR:
goh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
B932_2315
NER (nucleotide excision repair)
GGR (global genome repair) factors
B932_2315
MMR (mismatch excision repair)
DNA ligase
B932_2315
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
B932_2315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
RNA_ligase
Zn_ribbon_ISL3
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
AFW01873
LinkDB
All DBs
Position
complement(2312422..2314458)
Genome browser
AA seq
678 aa
AA seq
DB search
MIPADRHAELEILLARWDEAYHGKDDPEVSDAEYDAARQELLQLEEAHPELKREGGASER
VGAIPDSAFGKHRHLVPMLSLDNVFGAEGFDGFVSRVGRFLGLTEDGLQALQFVAEPKID
GLSISLTYENRKFVRGTTRGNGIEGEDVTANLLTLKDVPSTLPNDAPDVLEIRGEVFLSK
KNFLELNEQQEKRGIKPFANPRNAAAGSLRQLDPEITRSRPLSLFAYAQGYSSSPVSETH
WGYLETLRRWGFTVNPLSELIEHARDIPAYVDKLARERSGLDYDIDGIVFKLNDLSLQER
LGFAGRAPRWAIAWKFRAEQAMTRLIKIEIQVGRTGALTPVAHLEPVNVGGVIVSRATLH
NEDEIERKDVRDGDLVRLQRAGDVIPQILGVVESDEPRGPRYVFPDHCPVCGSLAERVHG
EAVRRCTGGLTCEAQVVERLIHMVSRAAFDIDGLGERSIREFHAAGYILKPGDIFRLKNH
QDALLKRDGWGQLSVDNLLRAIEERRTISLARLIFGLGIRRIGERNAQLLARHYGTFENW
RNAMVAAQIGTEEREALGSIMGVGGAIADELVAFFSEEHNVATLDDLRAELDTIETEAAP
SDGHLSGKTIVFTGTLTTMTRPEAKAIAERLGAQVTDSVSKKTSLVVLGEKAGSKAKKAA
DLGLETVDEAGWRTLAGL
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgattcctgccgatcgtcacgccgaacttgagattttgcttgcccgctgggacgaagct
tatcatggcaaagatgatccggaagtttccgacgcggaatatgatgccgcgcgtcaggaa
cttctgcagcttgaagaggctcaccctgaactgaagcgtgaaggcggggccagcgaacgc
gtgggggccattcctgactccgcatttggcaagcaccggcacctcgtgcccatgctttcg
ctggataacgtttttggcgctgaaggatttgatggttttgtgtctcgcgttggccggttt
ctggggctgacggaagatggtcttcaggcccttcagtttgtcgcggagccgaagattgac
gggctctccatcagcctcacctacgaaaaccgtaaattcgttcggggcaccacgcgtggc
aacgggatcgagggagaagacgtcaccgctaaccttctgacattgaaggatgttccatcc
accctcccgaatgatgcgcctgatgttttggaaatccgtggagaagtttttctgtcaaag
aagaacttccttgagctgaatgagcagcaggaaaagcgcggcatcaaaccctttgccaat
ccgcgcaatgcagccgctggctctcttcgccagctcgatccggaaatcacgcgtagtcgg
ccactttcgctctttgcttacgcgcaggggtactcctcttcgcccgtcagcgaaacgcac
tggggctatctggagacgcttcgtcgctggggtttcaccgtcaatccactgtccgaactg
attgagcacgcccgggacattcccgcctatgtggacaagcttgcgcgcgagcgttcagga
ctggattacgatattgacggtatcgtttttaaattaaacgatctttctctccaggagcgt
ctgggatttgcgggccgtgctcctcgttgggccattgcctggaaatttcgagctgaacag
gcgatgacacgcctaatcaaaatcgaaattcaggtcggtcgaacaggcgccctcacgcct
gttgcgcatcttgagccggtcaatgtgggcggtgtgatcgtctcccgtgcaacgctgcac
aatgaagacgagattgagcgcaaggacgttcgtgacggtgatctggtgcgcctgcaacgc
gccggggatgtcattccccagatactgggcgtggtcgagagtgatgagccacgcggtcca
cgatatgtttttccggatcactgccctgtctgcggatctctggcggaacgcgtccatgga
gaagccgtgcgccgatgcacaggtggtctgacctgtgaagcacaggtcgttgaacgcctg
atccatatggtgtcccgtgcggctttcgatattgatgggctgggcgaacggagcatccgg
gagtttcatgctgcgggctacattctcaaacccggtgatattttccgtctgaaaaatcat
caggatgcgctgttaaaacgcgatggctggggtcagctttcggtcgacaacctgcttcgt
gccattgaagagcgccgaaccatctctctagcccgccttattttcggccttggtatccga
cgtatcggagaacgcaacgcacagcttctggcccggcattacggtactttcgaaaactgg
cgtaacgccatggttgcggcgcagatcggcacggaagaacgagaagccctcgggtccatc
atgggcgttgggggcgcgattgcggatgaactggtcgctttcttctccgaagagcacaat
gttgccacgctggatgatctgcgagctgagttagacacgattgagacggaggcagcgccc
tcagacggccatctgtctggcaaaaccatcgtattcactggcaccctgacaaccatgaca
cgccctgaagccaaagccattgcagagcggctgggcgcacaggtgacggacagcgtttcc
aaaaagacatctctggttgttcttggagagaaagcgggttcaaaagcaaagaaggcggct
gaccttgggcttgaaactgttgacgaagcaggctggagaaccctggccggtctttga
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