Gordonia otitidis: LK459_18145
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Entry
LK459_18145 CDS
T07915
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
goi
Gordonia otitidis
Pathway
goi03030
DNA replication
goi03410
Base excision repair
goi03420
Nucleotide excision repair
goi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
goi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LK459_18145 (ligA)
03410 Base excision repair
LK459_18145 (ligA)
03420 Nucleotide excision repair
LK459_18145 (ligA)
03430 Mismatch repair
LK459_18145 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
goi03032
]
LK459_18145 (ligA)
03400 DNA repair and recombination proteins [BR:
goi03400
]
LK459_18145 (ligA)
Enzymes [BR:
goi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LK459_18145 (ligA)
DNA replication proteins [BR:
goi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LK459_18145 (ligA)
DNA repair and recombination proteins [BR:
goi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LK459_18145 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LK459_18145 (ligA)
MMR (mismatch excision repair)
DNA ligase
LK459_18145 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LK459_18145 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
WapI
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
UEA61662
LinkDB
All DBs
Position
3963913..3965988
Genome browser
AA seq
691 aa
AA seq
DB search
MREQWSKLAEEIRDHQFRYYVKDAPIISDGEFDRLLRQLQELEDDHPELATPDSPTKLVG
GGFSTAFTPVDHLERMLSLDNVFDADEMRTWVSRVEDEVGAGTEYLCELKIDGVALALVY
IDGVLDHAVTRGDGRTGEDVTLNARTIEDVPGRLTSTDDYPIPHVLEVRGEVFFRVEDFE
ALNAALVEDGKAPFANPRNSAAGSLRQKNPQITKQRRLRMICHGLGHTEGWKPASLHDAY
LAIGAWGLPVSTHTTKVSGADAILDRIAYWGEHRHDVEHEIDGIVVKVDDFAKQRRLGST
SRAPRWAIAYKYPPEEATTKLLDIKVGVGRTGRVTPFAFMEPVLVAGSTVSRATLHNESE
VRRKGVLIGDTVTIRKAGDVIPEVLGPVVEMRDGSEREFVMPDRCPECGTPLRPEKDSDA
DIRCPNAETCPAQLRERLFHLAGRSALDIEALGYKGASSLLAAGVITNEGDLFSLDEDDL
RKTDLFTTQDGELSQNGRALLANLENAKHAPLWRVLVGLSIRHVGPPTARSLATEFGSLQ
AIEDASPEQLADVDGVGATLAQSIHDWFAVDWHREIIEKWRAAGVSMEDERDESIVRTLE
GKTVVVTGSLQNYSRDGAKEAILARGGKASGSVSKKTDYVVVGDSPGSKAAKAEQLGVPV
LDEDEFTHLLETGEPPARAAESSTPSAEESS
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
gtgcgtgagcagtggtcgaagctcgccgaggagatccgcgaccaccagttccgctactac
gtcaaggacgcgccgatcatctctgacggcgagttcgatcgcctgctgcgtcagttgcaa
gaactcgaggatgaccacccagaactcgccacgcccgattcaccgaccaaactcgtcggc
ggtggcttctcgacggcgttcactcccgtcgaccacctcgaacgaatgctgtcgctcgac
aacgtcttcgacgccgacgagatgcggacatgggtgtcacgcgtcgaggacgaggtcggg
gcaggcaccgagtacctgtgcgaactcaagatcgacggtgtggcgctcgcgctcgtctac
atcgacggcgtcctcgaccatgcggtgacgcgcggcgacgggcggaccggtgaggacgtc
accctcaacgcgcgcaccatcgaagacgtcccggggcgcctgacgtccaccgacgactac
ccgatcccgcacgtgctcgaggtccgcggcgaggtgttcttccgggtcgaggacttcgag
gcgctcaacgcagcactcgtcgaggacggcaaggccccgttcgccaatccgcgcaactcg
gcggcggggtcgctgcgacagaagaatccgcagatcaccaagcagcgccgcctgcggatg
atctgtcacggactcggccacaccgagggatggaagcccgcgtcgctgcacgacgcctat
ctcgcgatcggggcatggggtctgccggtatccacgcacaccaccaaggtctctggtgcc
gacgccattctcgaccgcatcgcctactggggcgaacaccgccacgacgtcgagcacgag
atcgacggaatcgtcgtgaaggtcgacgatttcgccaagcagcgccgcctgggctccacc
tcgagggcgccgaggtgggccatcgcctacaaataccctccggaagaagcgaccacaaag
ctgctcgacatcaaggtgggcgtcgggaggaccggacgtgtcacccccttcgcattcatg
gaaccggtgctggtcgctggttcgacggtgtcacgggcgacgctgcacaacgagtcggag
gtacgccgcaaaggcgtgctgatcggcgacaccgtcacgatccgcaaggcaggagacgtg
attcccgaggtgctcggccccgtggtcgagatgcgcgacggcagcgagcgcgagttcgtc
atgcccgaccggtgtcctgagtgcggcactccgctgcgtccggagaaggacagtgatgcc
gacatccgctgtcccaacgccgaaacctgcccggcgcagctgcgcgaacggctgttccac
ctggcggggcgcagcgcactggacatcgaggctctcggttacaagggtgcgtcctcgctg
ctggctgccggagtcatcaccaatgagggcgacctgttctcgctcgacgaggatgacctc
cggaagacggatctgttcaccacccaggacggcgaactgtcacagaacggcagagcgtta
ctcgccaatctcgagaacgcgaagcacgcaccgctgtggcgggtcctggtcgggttgtcg
atccgacacgtcggcccgccgaccgctcgctctctcgcaaccgaattcggctcactgcag
gcaatcgaggacgcgagcccggaacagctggccgacgtcgacggcgtcggcgcgacactc
gcgcagagcattcacgattggttcgccgtcgactggcatcgcgagatcatcgagaagtgg
cgtgccgcaggggtgtccatggaggacgagcgtgacgagtcgatcgtgcgcacgctcgag
ggcaagaccgtcgtggtgaccggttcgctgcagaactactcgcgcgacggggcgaaagaa
gccattctggcgcgcggtggcaaggcgtcgggctcggtgtcgaagaagaccgactacgtc
gtcgtcggggactccccggggagcaaggcggcgaaggccgagcaactcggtgtgccggtg
ctcgacgaggacgagttcacacatctcctggagacgggggagcccccagcgcgtgctgcc
gaatcgtctaccccgagtgctgaggaatcgagctga
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