Gordonia insulae: D7316_05440
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Entry
D7316_05440 CDS
T05722
Symbol
ligA
Name
(GenBank) DNA ligase A
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gom
Gordonia insulae
Pathway
gom03030
DNA replication
gom03410
Base excision repair
gom03420
Nucleotide excision repair
gom03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D7316_05440 (ligA)
03410 Base excision repair
D7316_05440 (ligA)
03420 Nucleotide excision repair
D7316_05440 (ligA)
03430 Mismatch repair
D7316_05440 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gom03032
]
D7316_05440 (ligA)
03400 DNA repair and recombination proteins [BR:
gom03400
]
D7316_05440 (ligA)
Enzymes [BR:
gom01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
D7316_05440 (ligA)
DNA replication proteins [BR:
gom03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
D7316_05440 (ligA)
DNA repair and recombination proteins [BR:
gom03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
D7316_05440 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D7316_05440 (ligA)
MMR (mismatch excision repair)
DNA ligase
D7316_05440 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
D7316_05440 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
DUF7575
Motif
Other DBs
NCBI-ProteinID:
AZG48819
UniProt:
A0A3G8JW14
LinkDB
All DBs
Position
5922616..5924748
Genome browser
AA seq
710 aa
AA seq
DB search
MGIRISVGPLRYSRYVAEDVGTTGPSGDLREEWTALADEIREHQFRYYVRDAPIITDGEF
DRLLRQLQEMEDAHPELATPDSPTKLVGGGFSTAFTPVDHLERMMSLDNVFDADEMRAWV
DRVEAETGSGTDFLCELKIDGVALGLVYTDGTLTRAVTRGDGRTGEDVTLNARTIEDVPQ
RLTATDDYPIPAVLEVRGEVFFRVEDFETLNASLVADGKAPFANPRNSAAGSLRQKNPQI
TARRRLRMICHGIGHTEGWRPASLHDAYLALGAWGLPVSDHTTKVEGTGQILDKIAYWGE
HRHDVEHEIDGIVVKVDDVTAQRRLGATSRAPRWAIAYKYPPQEATTKLLDIKVGVGRTG
RVTPFAFMEPVLVAGSTVARATLHNESEVRRKGVLIGDTVTIRKAGDVIPEVLGPVVDVR
DGSEREFEMPTRCPECGTELRPEKDSDADIRCPNAESCPAQLRERLFHLAGRGSFDIEAL
GYEAATALLTSGVIGNEGDLFSLTAEDLAETDLFTTKAGALSANGKRLLANLEGAKDVAL
WRVLVGLSIRHVGPTAARALATDFGSLQAIEDATIEDLAGVEGLGMTLAQSINDWFTVDW
HREVVEKWRAAGVSMEDERDESIARTLEGKTLVVTGSLEDFSRDGAKEAILQRGGKASGS
VSKKTDFVVVGDSPGTKAAKAEQLGVPILDEAAFKRLLETGEYDGAVDDD
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atggggatcaggatatccgtcggtccgctccgatactctcggtacgtggcagaagacgtc
ggcacgacaggccccagcggcgatctgcgcgaggagtggaccgctctcgcggacgagatc
cgggagcatcagttccgctactacgtccgcgacgccccgatcatcaccgacggcgaattc
gaccgcctgctgcggcaactgcaggagatggaggacgcgcatccggagctcgcgaccccc
gattcgccgacgaaactcgtcggcgggggattctccaccgcgttcaccccggtcgatcac
ctcgaacgcatgatgtctctcgacaacgtcttcgatgccgacgagatgcgggcctgggtc
gaccgtgtcgaggccgagacgggttcgggtaccgacttcctctgcgaactgaagatcgac
ggcgtcgcgctcggcctcgtgtacacggacgggacgctgacgcgcgcggtcacccgcggt
gacggccgtacgggcgaggacgtcaccctcaacgcgcgcaccatcgaggacgtcccgcag
cggttgaccgccaccgacgactacccgatcccggccgtgctcgaggtccgcggcgaggtc
ttcttccgcgtggaggatttcgagacgctcaacgcatcgctggtggccgacggcaaggcc
ccgttcgccaacccgcgcaactccgccgccggctcgctgcggcagaagaatccgcagatc
accgcgcgccgccggctccgcatgatctgccacgggatcggccacaccgaagggtggcgc
ccggcgtcgctgcacgatgcgtatctcgccctcggcgcatggggcctgccggtctcggac
cacaccaccaaggtcgagggcaccgggcagatcctggacaagatcgcctactggggtgaa
catcggcacgacgtcgagcacgagatcgacgggatcgtggtgaaggtcgacgacgtcacc
gcgcaacgacgtctcggcgccacctcccgcgcgccgcgatgggcgatcgcatacaagtat
ccgccgcaggaggccacgaccaagctcctcgacatcaaggtcggtgtcggacgtaccggc
cgggtcaccccgttcgcgttcatggagccggtgctggtggccggctcgaccgtcgcgcgc
gcgaccctgcacaacgagtccgaggtccggcgcaagggcgtcctgatcggtgacacggtc
accatccgcaaggcgggcgatgtgatccccgaggtcctcggacccgtcgtcgacgtccgc
gacggcagcgagcgcgagttcgagatgccgacccgttgcccggagtgcggcaccgagcta
cgcccggagaaggacagtgatgccgacatccgttgtcccaacgcggaatcgtgcccggcg
caactccgcgagcgactctttcacctcgccggccgcggctccttcgacatcgaggctctg
gggtacgaggccgccaccgcgctcctcacctcgggcgtgatcggcaacgagggtgatctg
ttctccctgaccgcggaggatctggccgagaccgacctgttcaccaccaaggcaggtgcg
ttgtcggccaacggcaagcggttgctcgccaatctggaaggcgccaaagacgttgcgctg
tggcgggtcctggtcggcctctcgatccggcacgtcggcccgaccgcggcccgcgcactg
gcgacggatttcggttccctgcaggcgatcgaggacgcgaccatcgaggatctcgccggt
gtcgaaggcctcggcatgaccctcgcgcagagcatcaacgattggttcaccgtcgactgg
caccgtgaggtcgtcgagaagtggcgcgcggcaggtgtttccatggaagacgaacgcgac
gagtccatcgcgcggacgctcgagggcaagaccctggtggtcaccgggtcgctggaggac
ttctctcgcgacggcgcgaaggaggccattctccagcgtggcggcaaggcgtccggttcg
gtgtcgaagaagaccgacttcgtcgtcgtcggtgactcgcccggcaccaaggcggcgaag
gccgaacaactcggcgtgccgatcctcgacgaggccgccttcaagcgtctgctggagacc
ggggagtacgacggcgccgtcgacgacgactga
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