Gordonia sp. X0973: HUN08_11845
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Entry
HUN08_11845 CDS
T10819
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
goo Gordonia sp. X0973
Pathway
goo03030
DNA replication
goo03410
Base excision repair
goo03420
Nucleotide excision repair
goo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
goo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HUN08_11845 (ligA)
03410 Base excision repair
HUN08_11845 (ligA)
03420 Nucleotide excision repair
HUN08_11845 (ligA)
03430 Mismatch repair
HUN08_11845 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
goo03032
]
HUN08_11845 (ligA)
03400 DNA repair and recombination proteins [BR:
goo03400
]
HUN08_11845 (ligA)
Enzymes [BR:
goo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HUN08_11845 (ligA)
DNA replication proteins [BR:
goo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HUN08_11845 (ligA)
DNA repair and recombination proteins [BR:
goo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HUN08_11845 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HUN08_11845 (ligA)
MMR (mismatch excision repair)
DNA ligase
HUN08_11845 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HUN08_11845 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
Motif
Other DBs
NCBI-ProteinID:
QKT07802
LinkDB
All DBs
Position
complement(2417479..2419521)
Genome browser
AA seq
680 aa
AA seq
DB search
MDNGDLQREWTDLAEQVRDHQFRYYVRDSPIVSDAEFDKLFRQLQALEDAHPELAVPDSP
TKLVGGGFATEFTAVDHLQRMLSLDNVFDDDEMRAWIERTDAAAGAQVPFLCELKIDGVA
LNLVYENGALIRAATRGDGRTGEDVTLNARTITDIPDRLTATDEYPVPDVLEVRGEVFFR
LADFEALNASLVEAGKPPFANPRNSAAGSLRQKNPAITAQRRLGMICHGVGHTQGWRPES
LHDAYLALGAWGLPVSSHTSRVDTSAEVLERIAYWGEHRHDVAHEIDGLVVKVDDTAVQR
RLGSTSRAPRWAIAYKYPPEEVTTKLLDIRVGVGRTGRVTPFAFMEPVLVAGSTVARATL
HNESEVRRKGVLIGDTVTIRKAGDVIPEVLGPVVDLRDGTERAFVMPTNCPECGAALRPE
KDSDVDIRCPNAQGCPAQLRERLFHLASRGAFDIEALGYEAATALLTSKVIANEGDLFGL
TAEDLGKADLFVTKSGALSANGKRLLDNLAKAKQVPLWRVLVALSIRHVGPTAARSLATE
FGSLDAIEAADEEQLAATDGVGAILAASVRDWFAVDWHREIVEKWRAAGVSMVDERDESI
ERTLEGKTIVVTGSLVDFSRDGAKEAILARGGKASGSVSKKTDYVVVGESPGSKADKAEQ
LGVPVLDEAGFKRLLETGEA
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
gtggacaacggggacttgcagcgcgaatggaccgacctggccgagcaggttcgcgaccac
caattccgctactacgtgcgggattcgccgatcgtttccgacgcggagttcgacaagctc
ttccggcagctgcaggcgctggaggacgcccatcccgaactcgccgtgccggattcgccg
acgaaactggtgggcggcggattcgcgacggagttcaccgccgtcgatcacctccagcgg
atgctctcgctggacaacgtcttcgacgacgacgagatgcgtgcctggatcgagcgcacc
gacgcggcggcgggcgcgcaggtcccgttcctgtgcgaattgaagatcgacggcgtcgcc
ctcaacctcgtctacgagaacggtgcgctgatccgcgccgccacccgcggcgacgggcgc
accggcgaggatgtgacgctcaacgcccgcacgatcaccgacatccccgaccggctgacc
gcgaccgacgagtacccggttcccgacgtgctggaggtccgcggcgaggtgttcttccgg
ctcgccgatttcgaggcgctcaacgccagcctcgtcgaggcgggcaagccgccgttcgcc
aacccgcgcaacagcgccgccggctcgctgcggcagaagaacccggcgatcaccgcgcag
cgccgcctcgggatgatctgccacggtgtcgggcacacgcaggggtggcgcccggaaagc
ctgcacgacgcctatctggcgctgggggcgtgggggctgccggtgtcctcgcacaccagc
cgcgtcgacacctccgccgaagtcctcgagcgcatcgcctactggggcgagcaccggcac
gacgtcgcacacgagatcgacggcctcgtcgtgaaggtcgacgacaccgccgtgcagcgg
cgcctgggatccacgtcgcgggcgccgcgctgggcgatcgcctacaagtacccgcccgag
gaggtcaccaccaagctcctcgacatccgggtcggcgtcggccgcaccgggcgggtgacc
ccgttcgcctttatggagccggtgctggtggccggttcgacggtggcgcgcgcgacgctg
cacaacgagtccgaggtgcgccgcaagggggtgctgatcggcgacaccgtcaccatccgc
aaggccggcgacgtcatcccggaggtgctcggacccgtcgtcgacctgcgcgacggcacg
gaacgcgcgttcgtcatgccgacgaactgcccggagtgcggtgccgcgctgcgcccggag
aaggactccgacgtcgacatccgctgccccaacgcccagggctgccctgcacagctgcgg
gagcggctgttccacctggcctcccgcggcgccttcgacatcgaggcactgggctacgag
gcggcgaccgcgctgctgacgtcgaaggtcatcgccaacgagggggacctgttcggcctc
accgccgaggacttggggaaggccgatctgttcgtcaccaagtccggcgcgctctccgcg
aacggcaagcgcctgctggacaacctcgccaaggccaagcaggtgccgctctggcgggtc
ctcgtcgccctgtcgatccgccacgtcggtccgacggcggcgcgctcgctggccaccgag
ttcggctccctggacgcgatcgaggcggccgacgaggagcaactcgccgccaccgacggg
gtcggggcgatcctcgccgcctcggtgcgcgactggttcgccgtcgactggcaccgggag
atcgtcgagaagtggcgcgcggcaggcgtttccatggtcgacgagcgcgacgagtcgatc
gagcggacgctggagggcaagaccatcgtcgtcaccggctccctcgtcgacttctcccgc
gacggtgccaaagaggcgatcctggcccgcggcggcaaggcgtccggctcggtgtcgaag
aagaccgattacgtcgtcgtcggggagtcacccggctccaaggccgacaaggccgaacag
ctgggcgtgccggtcctcgacgaggccgggttcaagcgactgttggaaaccggcgaggcg
tag
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integrated database retrieval system
