Gordonia sp. SMJS1: QAD21_16315
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Entry
QAD21_16315 CDS
T10225
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gos Gordonia sp. SMJS1
Pathway
gos03030
DNA replication
gos03410
Base excision repair
gos03420
Nucleotide excision repair
gos03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gos00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QAD21_16315 (ligA)
03410 Base excision repair
QAD21_16315 (ligA)
03420 Nucleotide excision repair
QAD21_16315 (ligA)
03430 Mismatch repair
QAD21_16315 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gos03032
]
QAD21_16315 (ligA)
03400 DNA repair and recombination proteins [BR:
gos03400
]
QAD21_16315 (ligA)
Enzymes [BR:
gos01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QAD21_16315 (ligA)
DNA replication proteins [BR:
gos03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QAD21_16315 (ligA)
DNA repair and recombination proteins [BR:
gos03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QAD21_16315 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QAD21_16315 (ligA)
MMR (mismatch excision repair)
DNA ligase
QAD21_16315 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QAD21_16315 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
DUF8259
Motif
Other DBs
NCBI-ProteinID:
WGJ84341
LinkDB
All DBs
Position
complement(3569700..3571790)
Genome browser
AA seq
696 aa
AA seq
DB search
MADTTESGQPVTEQSGPEADLREEWTALAEEIREHQFRYYVKDAPVITDGEFDQLLRRLQ
ALEDAHPELATADSPTKLVGGGFSTAFSAVDHLERMMSLDNVFDHDEMRAWVDRVVADAG
ARADFLCELKIDGVALALVYRNGVLERGVTRGDGRTGEDVSLNARTIDDIPMRLTESPEY
PIPEVLEVRGEVFFRVEDFEALNASLVAEGKPPFANPRNSAAGSLRQKNPQVTARRKLRM
ICHGIGHTEGWRPESLHDAYLALGAWGLPVSTHTTKVSGADEIIDKIAYWGEHRHDVEHE
IDGIVVKVDDVTVQRRLGSTSRAPRWAIAYKYPPEEATTKLSDIQVNVGRTGRVTPFAVL
DPVLVAGSTVSRATLHNGSEVKRKGVLIGDTVTIRKAGDVIPEVLGPVVDLRDGTEVEFE
MPELCPACETPLRPEKESDADLRCPNQESCPAQLRERLFHLAGRGSFDIEALGYEAASAL
LSAGVLTNEGDLFSLTAEDLIRTDLFTTKAGALSANGKRLLANLDKAKDVALWRVLVGLS
IRHVGPTAARALATEFGSLEAIEAADIDQLAGVEGLGMTLAQSIHDWFTVDWHRDIVEKW
RAAGVSMEDERDESIPRTLEGKTIVVTGSLVDFSRDGAKEAILQRGGKASGSVSKKTDYV
VVGDSPGTKADKAEQLGVPVLDEDAFKKLLETGSPE
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
gtggcagatacaacggagtcgggccagccggtcaccgagcagtcggggccggaggcggac
ctgcgtgaggagtggaccgcgctcgccgaggagatccgcgagcaccagttccgctactac
gtgaaggacgcgccggtcatcaccgacggcgagttcgatcagcttctccgacgcctgcag
gcgctcgaggacgcgcatcccgaactcgcgaccgccgactcacccaccaagctcgtcggg
ggtggcttctccacggcgttctccgcagtggaccacctcgagcgaatgatgtcgctggac
aacgtcttcgaccacgacgagatgcgcgcctgggtcgaccgcgtggtcgccgacgccggc
gcccgggccgacttcctctgcgagctcaagatcgacggcgtggccctggcgctggtctac
cggaacggggttctcgagcgaggtgtcacccgtggcgacggacgcaccggtgaggacgtc
tcactgaacgcgcgcaccatcgacgacatcccgatgcgcctgaccgagtccccggagtac
ccgattcccgaggtcctcgaggtgcgtggcgaggtcttcttccgggtggaggacttcgag
gcgctcaacgcctcgctcgtggcggagggcaagccgccgttcgcgaacccgcgcaactcg
gccgccggctcgctgcggcagaagaatccgcaggtcacggcccgtcgcaagctgcggatg
atctgtcacgggatcgggcacaccgagggttggcgaccggagtcgttgcacgacgcctac
ctggcgctcggggcctggggtctgccggtgtcgacccacaccaccaaggtgtccggcgcc
gacgagatcatcgacaagatcgcctactggggcgagcaccgtcacgacgtcgagcacgag
atcgacggcatcgtggtcaaggtcgacgacgtcacggtgcagcgccgcctcggttccacc
tcgcgggcgccgcggtgggcgatcgcctacaagtacccgcccgaggaggccaccaccaag
ctctccgacatccaggtcaacgtcgggcggaccggccgcgtcactcccttcgcggtcctc
gatcccgtgctcgtcgccgggtccacggtctcgcgcgcgaccctgcacaacggttcggag
gtcaagcgcaagggtgtgctgatcggcgacaccgtcaccatccgcaaggcgggggacgtg
atccccgaggtcctcgggcccgtcgtcgatctccgcgacggcaccgaggtggagttcgag
atgcccgaactgtgcccggcctgcgagacgccgctgcgtcccgaaaaggagagcgacgcc
gacctccgctgtccgaaccaggagagttgtccggcccagttgcgcgagcggctcttccac
ctggccggtcggggttccttcgacatcgaggcgctcggctacgaggccgcgtcggccctg
ctgtcggcgggggtgctcaccaacgagggtgacctcttctcgctgacggccgaggacctg
atccgcacggatctgttcaccaccaaggcgggggcgctctcggccaacggcaagcggttg
ctggcgaacctcgacaaagccaaggacgtggcgctgtggcgcgtgctggtcgggctgtcg
atccgccatgtcgggcccaccgccgcccgcgccctcgccaccgaattcggttccctcgag
gccatcgaggccgccgacatcgaccagctcgccggcgtagaggggttgggaatgaccctc
gcccagtcgatccacgactggttcaccgtcgactggcatcgagacatcgtcgagaagtgg
cgcgccgcaggcgtttccatggaagacgagcgcgacgagtcgatcccgcggaccctcgag
ggcaagacgatcgtcgtgacgggttcgctggtggacttctcccgtgacggggccaaggag
gcgatcctgcaacgcggcggcaaggcgtcgggttcggtgtcgaagaagaccgactacgtg
gtggtgggggattcgccgggcaccaaggccgacaaggccgaacagctcggcgtgccggtg
ctcgacgaggacgcgttcaagaagttgctggagaccggcagccccgagtga
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