Gluconobacter oxydans DSM 3504: GLS_c01940
Help
Entry
GLS_c01940 CDS
T03563
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
goy
Gluconobacter oxydans DSM 3504
Pathway
goy03030
DNA replication
goy03410
Base excision repair
goy03420
Nucleotide excision repair
goy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
goy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GLS_c01940 (ligA)
03410 Base excision repair
GLS_c01940 (ligA)
03420 Nucleotide excision repair
GLS_c01940 (ligA)
03430 Mismatch repair
GLS_c01940 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
goy03032
]
GLS_c01940 (ligA)
03400 DNA repair and recombination proteins [BR:
goy03400
]
GLS_c01940 (ligA)
Enzymes [BR:
goy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GLS_c01940 (ligA)
DNA replication proteins [BR:
goy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GLS_c01940 (ligA)
DNA repair and recombination proteins [BR:
goy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GLS_c01940 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GLS_c01940 (ligA)
MMR (mismatch excision repair)
DNA ligase
GLS_c01940 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GLS_c01940 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AHK70121
UniProt:
A0A067Z0M9
LinkDB
All DBs
Position
212649..214700
Genome browser
AA seq
683 aa
AA seq
DB search
MTTAPVSAAERHAALEADLARWDEAYHGRDEPEVSDAVYDAARRELLALEEAYPDLRSQE
GASQRVGATPDSAFGKYRHLVPMLSLDNVFDPEGFDGFVSRVGRFLGLDEDGLQALQFVA
EPKIDGLSISLTYEHGRFVRGTTRGDGIEGEDVTANLLTLKDIPRELRGEAPERIEIRGE
VFLSKSSFLTLNEQQVARGAKPFANPRNAAAGSLRQLDAEITRSRPLSLFAYAQGYTSSP
VATTHWDYLEKLRNWGFTVNPLSQMIAHARDIPAYVEKLARERSELDYDIDGIVFKLDDL
SLQDRLGFAGRAPRWAIAWKFPAEQAITRLREIEIQVGRTGALTPVAHLEPVNVGGVIVS
RATLHNEDEIARKDVRVGDLVRLQRAGDVIPQILGPVPSEEPRSEPFVYPDHCPICGSLA
ERVHGEAVRRCTGGLTCEAQIVERLIHMVSRNAFDIDGLGERSIREFYDAGYIRRPGDIF
RLRQHEEALLQRDGWGRLSVDNLFRAIEDRRTIPLSRLIFGLGIRRIGERNAQLLARHYQ
TFENWRIAMLAARPDSEERASLGAIMGVGDAIADELSAFFSESHNIETLDDLASELKDII
AEEAPSEGHLSGKVIVFTGTLTTMSRPEAKAIAERLGAQVTDSVSKKTSLVVLGEKAGSK
AKKAAELGIETVDESGWRVLAGL
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgacaaccgcccctgtttctgccgccgagcgtcacgctgcactcgaagcggacctcgcg
cggtgggacgaggcgtatcacggacgcgacgagccggaagtttccgatgccgtctatgat
gctgcacgtcgtgagcttctggcgctggaagaagcatatccggatctccgctcccaagag
ggagccagccagcgcgtcggcgccacacccgattccgctttcggcaaatatcgccatctc
gtccccatgctgtcgctcgacaatgtcttcgatccggaaggattcgatggctttgtctcg
cgtgtgggccgctttctcggcctggacgaggacggacttcaggcgctccagttcgtggcc
gagcccaagatcgacggactctccatcagcctgacctacgagcacgggcgtttcgtgcgc
gggaccacgcgcggagacggcatcgaaggcgaagacgtcacggccaacctgctgaccctg
aaggatattccacgcgaactgcgcggcgaagcacccgaacggattgaaatccgtggcgaa
gtcttcctctccaaaagcagcttcctgaccctcaacgagcagcaggtcgcacgcggagca
aagcctttcgccaatccccgcaacgccgcagcggggtccctgcgccagcttgatgctgaa
atcacccgcagccgtccgctgtccctcttcgcctatgcgcaggggtacacgtcctcgccg
gttgcaacgacacactgggactatctggaaaaactgcgaaactgggggttcacggtcaat
ccgctctcccagatgattgcccatgcccgcgacatcccggcctatgtggagaagctggca
cgcgaacgctcggagctggactatgacatcgacggcatcgtcttcaaactggacgatctg
agccttcaggatcgtctcggctttgccggccgtgccccccgctgggccattgcgtggaag
tttccggcagaacaggccatcacgcgcctgcgggaaatcgagattcaggttggccgcacg
ggtgcgctgacacccgtcgcgcatcttgagcccgtgaatgtcggcggcgtcatcgtctcg
cgcgcgaccctgcacaacgaagatgaaatcgcccgcaaggacgtgcgcgtcggggatctg
gtccgcctgcagcgcgccggagacgtgatcccgcagatcctcggtcccgtcccaagcgaa
gagccccgctcggagcctttcgtctatcccgaccactgccctatctgcggatcgctcgcc
gagcgcgtgcatggcgaggccgtccgccgctgcacaggtggcctgacctgcgaagcgcag
atcgtggaacgcctgatccacatggtgtcacgcaatgcgttcgacatcgacgggctgggc
gaacgcagcatccgtgagttctacgacgcgggctacatccgcaggcccggcgacattttc
cgcctgcgccagcacgaagaggccctgctccagcgtgacggctggggacggctgtcagta
gacaacctcttccgcgccatcgaggaccgccgcaccattcctctgtcccgtctgattttc
gggcttggcatccggcggatcggagagcgcaacgcccagcttctggcgcggcattaccag
accttcgaaaactggcgcatcgccatgctggccgcccgaccggactccgaagaacgcgcc
tccctgggcgccatcatgggcgtgggcgatgcgatcgccgatgaactctccgcctttttc
tccgagagccacaatatcgagacactcgatgatctggcgtcggagctgaaagacatcatt
gccgaagaggccccctcggaagggcatctttccggcaaggtcattgtcttcaccggcacc
ctgaccaccatgagccgcccggaagccaaggctattgccgagcgtctgggcgcacaggtg
acggatagcgtgtcgaaaaagacctctctggtcgtgctgggcgaaaaggctggttccaag
gccaaaaaagccgctgaactcgggatcgagactgttgatgaaagcgggtggcgcgtgctg
gcggggctgtaa
DBGET
integrated database retrieval system
