Gordonibacter pamelaeae: GPA_24930
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Entry
GPA_24930 CDS
T02609
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gpa
Gordonibacter pamelaeae
Pathway
gpa03030
DNA replication
gpa03410
Base excision repair
gpa03420
Nucleotide excision repair
gpa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gpa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GPA_24930
03410 Base excision repair
GPA_24930
03420 Nucleotide excision repair
GPA_24930
03430 Mismatch repair
GPA_24930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gpa03032
]
GPA_24930
03400 DNA repair and recombination proteins [BR:
gpa03400
]
GPA_24930
Enzymes [BR:
gpa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GPA_24930
DNA replication proteins [BR:
gpa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GPA_24930
DNA repair and recombination proteins [BR:
gpa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GPA_24930
NER (nucleotide excision repair)
GGR (global genome repair) factors
GPA_24930
MMR (mismatch excision repair)
DNA ligase
GPA_24930
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GPA_24930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
RNA_ligase
Prot_ATP_ID_OB_C
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
CBL04632
UniProt:
D6EA85
LinkDB
All DBs
Position
complement(2489866..2492061)
Genome browser
AA seq
731 aa
AA seq
DB search
MAKAPNAFGAFFPMEEVKTAVENMADEQQNLLDERALAEATSDPAARIEALRREIEHHTY
LYYAQDAPEISDGAFDSLMRELRELEAAHPELVDPSSPTQRVGGYVGEQFAPVRHARRMY
SLDNAMDLEELDAWIERVTEAFGRMVPVVCELKIDGSSIALTYEDGRLVRAATRGDGTTG
EDVTANMRTVKDVPLRLREAALGGLRDAAAPVELRGEVYMPKSSFDALNAAAVANGKQAF
ANPRNAAAGSLRQKDPAITANRDLSTFIYAVADERALAVEGQWELLAWLREAGFHVNPDV
ELCETREAVHAFCERAIERREALPYEIDGVVVKVNAFAQQESMGYTARAPRWAVAFKFPP
EEKTTLLHDITVQVGRTGKLTPVAEMEPVVVAGSTVARATLHNEDEVQRKDVRVGDTVIV
RKAGDVIPEVLGPVLALRPADAAVWRMPATCPSCGSPVIREEGEVDFRCISIDCPAQALE
RLLHWASRGAMDIDGMGEEIVSRLVESGRLTDVADYYTLDEVELALLDMGRVNKDGEPIR
LGSTVAKKLVAAIDGSRARPFSRALFGLGIRHVGKTIAELLAAAYPSIEALMEASEEDLA
ALDGVGPKIARSVYLFLRTPDNAAVIERLRKRGVAMADEAADPDEQLPQTLEGLTFVLTG
SLVESGMTRDEAGAALKARGAKVSGSVSKKTSYVVAGEAAGSKYDKAVTLGVPVLDEAAL
LRILETGEVPE
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaggccccgaatgcgttcggggccttcttcccgatggaggaagtcaagacggcg
gtggagaacatggcagacgaacagcagaacctcctggacgagcgggcgctcgccgaggcg
acgagcgatccggcggcgcgcatcgaggcgctgcgccgcgagatcgagcaccacacctac
ctgtactatgcccaggacgcgcccgagatatccgacggcgcgttcgactcgctcatgcgc
gagctgcgcgagctggaggcggcccaccccgagctcgtggacccgtcgagccccacgcag
cgcgtcggcggctacgtgggcgagcagttcgcccctgtgcggcatgcgcggcgcatgtac
tcgctcgacaacgccatggacctggaggagctggacgcgtggatcgagcgcgtgacggag
gcgttcggccgcatggtgccggtggtgtgcgagctcaagatcgacggctcgtccatcgcc
ttgacgtacgaggacgggcgcctcgtgcgcgcggcgacgcgcggcgatggcaccacgggc
gaggacgtcaccgccaacatgcgcacggtgaaggacgtgccgctgcgcctgcgcgaggcg
gcgctgggaggcctgcgcgacgcagccgcaccggttgagctgcgcggcgaggtgtacatg
cccaagagcagcttcgacgcgctcaacgcggccgccgtggcgaacggcaagcaggcgttc
gcgaacccgcgcaacgccgcggcggggagcctccgccagaaggaccccgccatcacggcg
aaccgcgacctctccacctttatatacgcggtggccgacgagcgtgcgctggccgtcgag
ggccagtgggagctgctggcgtggctgcgcgaggcgggcttccacgtgaaccccgacgtc
gagctgtgcgagacgcgcgaggcggtgcacgcgttctgcgagcgcgccatcgaacgccgc
gaggctctgccctacgagatcgacggcgtggtggtgaaggtgaacgcgttcgcccagcag
gagtcgatgggctacacggcccgcgcgccgcgctgggccgtcgccttcaagttccctccc
gaggagaagaccacgctcctgcacgacatcaccgtgcaggtggggcgcaccggcaagctc
acgcccgtggccgagatggagccggtcgtggtggcgggctcgaccgtggcgcgcgcgacg
cttcacaacgaggacgaggtgcagcgcaaggacgtgcgcgtgggcgacaccgtcatcgtg
cgcaaggcgggcgacgtcatccccgaggtgctggggccggtgctggcgctgcgtccggcc
gacgccgcggtgtggcgcatgccggcaacgtgcccgagctgcggcagccccgtcatccgc
gaggagggcgaggtggacttccgctgcatctccatcgactgcccggcgcaggcgctggag
cggctgctgcactgggccagccgcggcgccatggacatcgacggcatgggcgaggagatc
gtgtcgcgcctcgtggagagcggtcgtttgaccgacgtggccgactactacacgctcgac
gaggtggagctcgcgctgctcgacatgggccgcgtgaacaaggacggcgagcccatccgc
ctcgggtccaccgtggcgaagaagctcgtggccgctatcgacggcagccgcgcgaggccg
ttctcccgcgcgctcttcgggctgggcatccgccacgtgggcaagaccatcgccgagctg
ctggcggcggcgtacccgtccatcgaggcgctcatggaggcgtcggaagaggaccttgcc
gccctcgacggcgtgggcccgaagatcgcgcgcagcgtgtacctgttcctgcgcacgccc
gacaacgcggccgtcatcgagcgcctgcgcaagcgcggcgtggcgatggccgacgaggcg
gccgaccccgacgagcagctgccccagacgctcgaggggttgacgttcgtcctgaccggc
tccctcgtggaaagcggcatgacccgcgacgaggcgggcgcggcgctcaaagcgcgcggt
gcgaaggtgagcggcagcgtgtcgaagaagacgagctacgtcgtggccggcgaggccgcc
ggctccaagtacgacaaggccgtgaccctcggcgtgcccgtactcgacgaggccgccctc
ctgcgcatcctggaaaccggcgaggtgccggagtag
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