Gamma proteobacterium HdN1: HDN1F_30300
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Entry
HDN1F_30300 CDS
T01300
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gpb
Gamma proteobacterium HdN1
Pathway
gpb03030
DNA replication
gpb03410
Base excision repair
gpb03420
Nucleotide excision repair
gpb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gpb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HDN1F_30300 (ligA)
03410 Base excision repair
HDN1F_30300 (ligA)
03420 Nucleotide excision repair
HDN1F_30300 (ligA)
03430 Mismatch repair
HDN1F_30300 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gpb03032
]
HDN1F_30300 (ligA)
03400 DNA repair and recombination proteins [BR:
gpb03400
]
HDN1F_30300 (ligA)
Enzymes [BR:
gpb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HDN1F_30300 (ligA)
DNA replication proteins [BR:
gpb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HDN1F_30300 (ligA)
DNA repair and recombination proteins [BR:
gpb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HDN1F_30300 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HDN1F_30300 (ligA)
MMR (mismatch excision repair)
DNA ligase
HDN1F_30300 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HDN1F_30300 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
DNA_ligase_ZBD
BRCT
Nlig-Ia
HHH
PTCB-BRCT
5_3_exonuc
DUF7340
Motif
Other DBs
NCBI-ProteinID:
CBL46613
LinkDB
All DBs
Position
3718508..3720541
Genome browser
AA seq
677 aa
AA seq
DB search
MNHSSASDREEAQALRAQLQEHNYRYYVLDDPSVPDSEYDRLFQRLLALEQAHPDLITQD
SPTQRVGAAPLAAFKQVQHRVPMLSLDNVFNAAELLAFEKRIHDRLKSEVPVDFVCEPKL
DGLAVSLLYRDGLFVQGATRGDGETGEDITQNLRTLSTVPLRLMGEGFPSELEVRGEVYM
PKAGLAELNQRQTSAGDKTFANPRNAAAGSLRQLDPRITAKRPLELYCYGIGHVAGGTLP
ARHSAILAALGKWGFRVNPEIRSAANAAECQRYYDALLARRDALAYDIDGVVYKVDELAL
QQRLGFVSRAPRWAIAHKFPAQEEITRLLDVEFQVGRTGAVTPVARLEPVYVGGVTVSNA
TLHNMDEVARLDIHVGDTVVVLRAGDVIPRIVRVLPERRPPYAPVVMLPAACPVCGSAIT
REEGEAVARCSGGLFCPAQTKEAIKHFSARRAMDIDGLGDKIVDQLVDTGLVASVADLYS
LASASLAALERMGEKSADKLVAAIAKSRNTTFQRFLFALGIREVGEATAQTLARHYETLD
ALLRADEASLLEVPDIGPVSARNIVQFFAQPHNREVLDRLLAAEIHWPAPVKADVSALPL
SDQTLVLTGSLSQLSRDEAGDHLRALGAKVSGSVSKNTTAVYAGEKAGSKLARAESLGIP
VYTEDELMSLLREHGRL
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
gtgaaccatagcagcgcaagcgaccgcgaagaagcccaagcgcttcgggcgcagctgcaa
gaacacaattatcgctattacgtgctcgacgatccgagtgtgccggacagtgaatatgac
cggctctttcagcgtttgcttgcattggaacaggcgcaccctgacctgatcacgcaggat
tcaccgacgcagcgggttggggcagcgcctttggccgcttttaagcaggtgcagcatcgc
gtgcccatgctttccttggataacgtattcaatgcggcagagctgctcgcgtttgaaaag
cgcatccacgatcgtctgaaatccgaagtgccagtagattttgtttgcgaacccaaatta
gacggcctagcggtctctttactttaccgtgatggcttgttcgtgcaaggcgcgactcgc
ggcgatggtgaaaccggtgaggatatcacgcaaaaccttcgcaccctttcaaccgtaccg
ttacgcctgatgggcgaaggttttcccagcgagctggaagtgcgtggtgaagtctatatg
ccaaaagctgggctggcggaactcaatcagcgtcaaacttctgccggtgataaaaccttc
gcgaacccccgcaacgcagccgcaggcagcctgcgccagctcgaccctcgcatcaccgcc
aaacgaccgctggagttgtattgctacggaattggccatgtggccggtgggacgcttccc
gcacgacactccgcgattttagcggcgcttggaaaatggggttttcgtgtgaaccccgaa
attcgtagcgcagcaaatgcagcggaatgccagcgttattacgatgcacttttggcgagg
cgcgatgcattggcgtatgacatcgacggagtggtctataaagtcgatgaattagccttg
cagcagcgcttaggctttgtgtcgcgcgccccgcgttgggccatcgcccataaatttccg
gcgcaagaagaaattactcgcttattggatgtggagtttcaagttggccgcacaggggcc
gtcacgccggttgcgcgcttggagccggtttatgtgggcggcgttacggtttctaacgcc
acgcttcataacatggatgaagttgcccgccttgatattcatgttggcgacaccgtggtc
gttctgcgtgctggggacgttataccacgcatcgtgcgtgtacttcccgagcgcaggccg
ccctacgcgcctgtcgttatgctaccagcggcctgcccggtgtgcggttctgccatcacc
cgtgaagaaggagaggccgttgcacgctgttctggtggcctgttctgccccgcgcagacc
aaagaggccatcaagcatttttccgcgcggcgcgcgatggatattgatggcctaggcgac
aaaattgtcgatcagctcgtggataccggattggttgcgagcgtggcagatctatattct
ttggcttctgcctcacttgccgcgttagagcgcatgggcgagaaatcggcggataaattg
gttgccgcaattgccaaaagccgcaacaccactttccaacgtttcttgtttgcgctagga
attcgtgaggtgggcgaggccactgcgcaaaccttggcacgccattacgaaacgctagac
gcgctcttacgcgcagacgaagccagccttttagaagttccagacatcggccccgtcagc
gcccgcaatatcgttcagttttttgcgcaaccgcataaccgggaagtgctggatcgcctt
ttagccgctgaaatccattggcccgcgcccgttaaggcagatgttagcgccttgccgctt
agcgatcaaaccctcgtgcttaccggtagcctctcgcagctctcgcgcgatgaagccggt
gatcatcttcgagcgctaggcgcaaaggtaagcggctcggtatctaaaaatacgacggcg
gtgtatgcgggcgaaaaggccggctctaaacttgcccgcgcagaaagccttggcatccct
gtctacacggaagatgagctgatgagcttgttgcgtgagcatggtaggctttaa
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integrated database retrieval system
