Gemmatimonas phototrophica: GEMMAAP_04770
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Entry
GEMMAAP_04770 CDS
T04580
Name
(GenBank) hypothetical protein
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gph
Gemmatimonas phototrophica
Pathway
gph03030
DNA replication
gph03410
Base excision repair
gph03420
Nucleotide excision repair
gph03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gph00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GEMMAAP_04770
03410 Base excision repair
GEMMAAP_04770
03420 Nucleotide excision repair
GEMMAAP_04770
03430 Mismatch repair
GEMMAAP_04770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gph03032
]
GEMMAAP_04770
03400 DNA repair and recombination proteins [BR:
gph03400
]
GEMMAAP_04770
Enzymes [BR:
gph01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GEMMAAP_04770
DNA replication proteins [BR:
gph03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GEMMAAP_04770
DNA repair and recombination proteins [BR:
gph03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GEMMAAP_04770
NER (nucleotide excision repair)
GGR (global genome repair) factors
GEMMAAP_04770
MMR (mismatch excision repair)
DNA ligase
GEMMAAP_04770
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GEMMAAP_04770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
DNA_ligase_ZBD
BRCT_2
HHH
FeoA
T2SSC
UPF0758_N
zf-ribbon_3
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
AMW04343
UniProt:
A0A143BI98
LinkDB
All DBs
Position
complement(1176374..1178401)
Genome browser
AA seq
675 aa
AA seq
DB search
MPAVPFATTQRAAELRDQLARAQYEYYVLDQPAMADQEYDRLFRELQAIEDQYPSERTED
SPTQRVGAPVQSAFRTHRHLVRMLSLDNAFDHAELLAFEQSIERVVGDAIHRSGYTVELK
IDGAAIALTYREGVLTTAATRGDGTEGEDVTLNIRTIRGIPLRLRGTGHPPLMEIRGEVY
LPFAGFEQMNEARVAAGEPVYVNPRNAAAGSMRQLDPSITAQRPLRFFGYAAVLPDGSVP
AATQWDLLETLVAWGIPVAPHRQRCLTMDEVSRWAHTVEHETRAVLGFAIDGGVVKVNAL
AVQDELGIRNDRTPRWAVARKFAPDMAVTRLRQIDVNVGRTGVLTPFAVLEPVDVGGATV
TYASLHNADQIAAKDLREGDYVQVVRAGDVIPYVLGPVPERRDGTEVPWRIPAECPKCGA
PVVRYGDDVASYCTNVACAGRQLEALVHFASKDALDIDGLSYARIQQLLAAGFVHDFADL
FDVTVAQLVSLERFGEKSAENLVAAIAASKQQPLSRLLFGLGIRHVGAQAAQLLSRHFGS
LEAMMAATPEQLGEVRGIGDIIAASVASYFADPTARALLAKLQAHGLRLDEPNAVQADGP
FTGATVVLTGTLPTLSRGEATALIEKAGGRITSSVSRKTTFVVAGEEAGSKLEKARELGI
EVIDEAELMARASNS
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgcctgccgtcccttttgccacgacccagcgcgccgccgagctcagggatcagctcgcc
cgcgcgcaatacgagtactacgtcctcgaccagcctgccatggcggaccaggagtacgac
cgcctgttccgtgaattgcaggccatcgaagatcagtaccccagtgaacgcacagaagat
tcaccaacccaacgcgtgggagccccggtgcaatccgcgtttcggacgcatcggcatttg
gtgcgcatgttgtccctcgacaatgccttcgaccacgccgagttgctggccttcgaacag
tcgatcgagcgggtggttggggatgccattcaccgcagtggctataccgtggagctcaag
atcgacggcgcggccattgccctgacatatcgagagggcgtgctcaccaccgccgccacg
cggggcgatggtacggaaggcgaagatgtcacactcaacattcgcaccattcgtggcatc
ccgttgcggctgcgcggcaccggtcaccctccactcatggaaattcgtggcgaggtgtac
ctgcccttcgcgggcttcgagcagatgaatgaggcacgtgtggcggccggtgaaccggta
tatgtcaacccgcgcaatgccgcggccggctccatgcgccagcttgacccgtccatcacg
gcccagcgcccgctccggttctttggctacgccgccgtgttgccggacggcagcgtgccg
gccgcaacgcagtgggatctgctggagacgctcgtggcctggggtattccggtggcgccg
caccgtcagcgttgcctgacgatggacgaggtgagccgctgggcgcacacggtggaacac
gagacacgcgccgtgctgggcttcgcgattgatggtggtgtggtgaaggtgaacgcgctg
gcggtacaggatgagctgggcattcgcaatgatcggacgccccgctgggccgtagcgcgc
aagtttgcgccggacatggcggtgacccggttgcgccagattgatgtgaacgttggacgc
acgggcgtgctcacgccattcgccgtcctggagccggtagacgttggtggcgcgacggtg
acgtatgcatcgctgcataacgccgatcagattgcggccaaggatttgcgcgaaggcgat
tacgtgcaggtggtccgggctggtgacgtcattccgtatgtgcttggtccggtccccgag
cggcgcgacggaacggaggtgccgtggcgcattcccgccgagtgccccaaatgtggagcg
cccgtggtgcggtacggcgacgatgtcgccagctactgcaccaacgtggcctgtgccggg
cgtcagctcgaagcgctggtgcattttgccagcaaggacgccttggacattgacggcttg
tcctatgcccgtattcagcagctgctcgccgccgggttcgtgcacgactttgcggatctc
ttcgacgtcacggtggcgcagctcgtgtcgctcgagcgctttggcgaaaagagcgccgaa
aatctggtggccgcgattgcggcctcaaaacagcagccgctgtcccgcctgttgttcgga
cttggcatccggcacgtgggggcgcaggcggcgcagttgctgtcgcgccacttcggctca
ctggaggcgatgatggcggccactcccgagcagttgggtgaggtgcgtggcatcggcgat
atcattgccgcgagtgtggccagctactttgccgatcccacggcgcgcgcgctgcttgcc
aagttgcaggcccacggcctgcgcctcgacgagcccaacgcggtgcaggccgatggcccg
tttaccggggccacggtggtgctgaccggcacgttgccgaccctcagtcggggcgaagcg
acggcgctgatcgaaaaggccggcgggcggatcaccagcagcgtgtccagaaagacgacg
ttcgtggtagccggggaggaggcggggagcaagctggagaaggctcgcgaactgggaatc
gaggtaattgacgaggccgagctgatggcccgggccagcaacagctaa
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