Gimesia panareensis: Pan110_30480
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Entry
Pan110_30480 CDS
T07079
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gpn
Gimesia panareensis
Pathway
gpn03030
DNA replication
gpn03410
Base excision repair
gpn03420
Nucleotide excision repair
gpn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gpn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Pan110_30480 (ligA)
03410 Base excision repair
Pan110_30480 (ligA)
03420 Nucleotide excision repair
Pan110_30480 (ligA)
03430 Mismatch repair
Pan110_30480 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gpn03032
]
Pan110_30480 (ligA)
03400 DNA repair and recombination proteins [BR:
gpn03400
]
Pan110_30480 (ligA)
Enzymes [BR:
gpn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Pan110_30480 (ligA)
DNA replication proteins [BR:
gpn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Pan110_30480 (ligA)
DNA repair and recombination proteins [BR:
gpn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Pan110_30480 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Pan110_30480 (ligA)
MMR (mismatch excision repair)
DNA ligase
Pan110_30480 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Pan110_30480 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH
Zn_ribbon_Top1
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
QDU50693
LinkDB
All DBs
Position
complement(4044225..4046237)
Genome browser
AA seq
670 aa
AA seq
DB search
MSVQKEIGQLRQQLEHHNRLYYIKAKPEISDREFDKMMKRLEQLEEEHPEFDSPDSPTKK
VGGAPIEGFQTVPHRVPMLSIDNIFELEGLKDFETRICKLLGEGQIELTAEYKIDGVAVS
LVYENGHLVQGVTRGDGQQGDDITHNVRTIGGVPLRLNVKKPPALLEVRGEAYISNSDFQ
VLNVEMQEQGKEPFANPRNTTAGGLKLLDPKLCAKRKIRFFAHGIGAVEGVDYQTHVKYL
AAIQEMGIPATPNVKSFPNLEKTMEHAQTMMDDLHTLDFEVDGIVLKVNRFDQRELLGNT
SKSPRWVVAYKWERYEAVTRAESIVFQVGKTGTVTPVANLEPVQIAGTTVSRASLHNHDE
MLRLGIQIGDWVVVEKAGKIIPHVVRVEEHRRDGTQQELEFPTHCPECNTELVKDEGGVY
IRCPNPECPASVRETLRYYASRQAMDIEGMGIKMIEQLLEAGLLTGLADIYRLDEHYEDL
VNLERQGEKSIDNLLAGIESSKQQPLWRLLTGLNIRHVGASNARILEQEFGTIDEITKQS
VEDLAEVNEIGPVIAESVHNFFHSDFGQKLISDLKELGLNMGTPVAKKEKTNAGVLDGKT
VVVTGTLSRFTRDEAKELIVKHGGKASGSVSSKTDYVLAGEKAGSKLTKAQELEVPVLSE
EEFLTMLGEE
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgagcgttcaaaaagaaatcggacaacttcgacagcaactcgaacatcataaccggctg
tattatatcaaggcgaagccggaaatctctgaccgcgaattcgataagatgatgaagcgg
ctggagcaactcgaggaagaacatccggagtttgattcacccgacagcccgactaaaaaa
gtgggcggggcaccgattgaaggtttccagacagtcccccaccgcgtgccgatgctttcc
atcgataatatctttgagctggaaggtctcaaagatttcgagacgcgtatctgcaagctg
ctgggggaggggcagattgagctgaccgccgaatataaaattgacggagttgccgtttca
ttggtttatgaaaacgggcatctcgtacaaggggtgactcgaggcgacggccagcaggga
gatgacatcacacacaatgtccgcaccatcggtggtgtccccctgcggttgaatgtcaaa
aagcctcccgcactgctggaagtcaggggggaagcctacatcagcaattctgattttcag
gtactcaatgtcgaaatgcaggagcaggggaaagaaccatttgctaatccccggaatacc
acagcgggcggattgaaactgctggatccgaaactttgtgccaagcggaagattcgtttc
tttgcacatggtatcggcgcagtagaaggcgtcgattatcagacgcatgtgaaatacctc
gccgccattcaggagatgggaatcccggccacacccaacgtgaagtccttccccaacctg
gaaaagacgatggaacacgcccagacgatgatggacgatctgcacacgctcgattttgaa
gtcgacgggattgtgctcaaggtcaaccgttttgaccagcgtgaactgctcgggaatacc
tccaagagtccgcgttgggtcgttgcctataaatgggaacgctatgaagcggtcaccagg
gccgagtcgatcgtatttcaggtcggcaagacgggaacggtgacgccggtcgccaatctg
gaaccggtgcagattgccgggacaacagtctcacgtgccagtttgcacaatcatgatgaa
atgctgcggctggggattcagattggtgactgggtggttgtggagaaggccgggaaaatc
attccgcacgtggtgcgcgttgaggaacaccgccgggatggtacgcagcaggaactggaa
tttcccacgcactgtcccgagtgtaatacggaactggtcaaggatgaagggggcgtctat
atccggtgccccaatcccgaatgtcccgcttctgttcgtgaaacactccggtactatgct
tcacgtcaggccatggatatcgaaggaatgggcatcaagatgattgagcagttgctcgaa
gccggactgctcaccggactggctgacatctatcggctggacgaacattacgaagacctg
gtcaatctggaacggcagggagaaaagtcgatcgataatctgctggctgggattgaaagc
tcgaaacagcaaccactgtggcggttactcacaggactcaatatccggcacgtcggtgcc
agtaatgcccgcattctcgaacaggaattcggaacgattgacgagatcacaaagcagagt
gtagaagatctggcggaggtcaacgagatcgggcccgtgattgccgagtcggttcacaac
tttttccactctgatttcggacagaagctgatttccgatctgaaagagctgggcctcaat
atggggacacccgtcgcaaagaaagaaaaaacgaatgccggtgttctcgacggaaaaacg
gtggtcgttacgggaacactctcgcgttttacacgtgacgaagccaaggaattgattgtc
aaacatggcggcaaagcttccggttccgtttcttccaagaccgactatgtgctcgcaggg
gagaaggccggcagcaagctgaccaaagcccaggaactggaggtgcccgttctttccgaa
gaggaatttctcaccatgctgggagaagaataa
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integrated database retrieval system
