Glutamicibacter protophormiae: JQN66_04470
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Entry
JQN66_04470 CDS
T07442
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gpr
Glutamicibacter protophormiae
Pathway
gpr03030
DNA replication
gpr03410
Base excision repair
gpr03420
Nucleotide excision repair
gpr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gpr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JQN66_04470 (ligA)
03410 Base excision repair
JQN66_04470 (ligA)
03420 Nucleotide excision repair
JQN66_04470 (ligA)
03430 Mismatch repair
JQN66_04470 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gpr03032
]
JQN66_04470 (ligA)
03400 DNA repair and recombination proteins [BR:
gpr03400
]
JQN66_04470 (ligA)
Enzymes [BR:
gpr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JQN66_04470 (ligA)
DNA replication proteins [BR:
gpr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JQN66_04470 (ligA)
DNA repair and recombination proteins [BR:
gpr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JQN66_04470 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JQN66_04470 (ligA)
MMR (mismatch excision repair)
DNA ligase
JQN66_04470 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JQN66_04470 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
QRQ80346
LinkDB
All DBs
Position
937930..940209
Genome browser
AA seq
759 aa
AA seq
DB search
MGYVSENDVTPVETTNAPPAPARERHDELVEKIRAHREAYYQQDAPLVSDSEYDALFQEL
ELLEARYPILAGQDSPTQEVGGEVSAAFAPVTHASRMYSLEDVFSLEELDAWLERAGANA
NRLHPQIPVRWLCEVKIDGLALNLTYRDGKLVRAATRGDGTTGEDVTHNALTIADIPQQL
AGSGWPAEFEVRGEVFIATEDFNAYNEALIEQGKAPLANPRNAAAGSLRQKDPEQTAKRP
LRMFVHGLGRSRDFPITEQSQAYELMRGWGLPVSPYGRVVESLARVRDFIAEHGEKRHEL
IHDIDGIVVKVDDLSTQEQLGYTSRVPRWAVAYKYPPEEVHTKLLDIQVQVGRTGRVTPF
GVMEPVLVAGSTVARATLHNQEVVKAKNVLIGDTVILRKAGDVIPEIVGPVLALRDGSET
AFIMPTECPSCGQPLAPAKEGDVDIRCLNAESCPVQLTERVAYLGGRSALDIEALGYEAA
AALTSGPGEDPATQGGVILPAGPGPLHNEAELFDLKDKLDLLAEVKVWREKRVKGEGTGK
FDLVPYFFTKATAKKPSVPTKSTQKLFDELEKAKGNPLWRVLVALSIRHVGPNASRAIAT
RYGSMDALLEVIDAGNAVEELSQIDSVGSIIAEALVDWFKVDWHRDIVSAWQAAGVKMVD
ERDENITKNLEGLAIVVTGTMENYSRDTAKEAIIVRGGKATGSVSKKTDFLVAGEAAGSK
LDKARSLGVPVLDEAGFGILLEQGPEAAREAALPAPEGE
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
attggatacgtgagtgaaaatgacgtaacgccagttgagaccacaaacgccccgcctgcc
ccggcgcgtgaacgacatgacgagctggtcgaaaagatccgcgcgcaccgcgaggcctac
taccagcaagatgccccgctggtctcggactccgaatacgacgccttgttccaggaactg
gaactgctcgaagcccggtaccccatcctggccggccaggattcacccacccaggaggtc
ggcggcgaggtttccgcggccttcgccccggtgacgcacgccagccgcatgtactcgctg
gaagacgtgttctcgctggaggaactggacgcctggctggaacgcgccggcgcgaacgcc
aaccgcctgcacccgcagatcccggtgcgctggctgtgcgaggtgaaaatcgacgggctg
gccctgaatctcacctaccgcgacggcaaattggtccgcgccgccacccgcggcgacggc
accaccggagaagacgtcacccacaatgcgctgaccatcgctgacatcccgcagcagctg
gccggttccggctggccggccgaattcgaggtccgcggcgaggtcttcatcgctaccgag
gacttcaacgcctacaacgaggcgttgatcgagcagggcaaggccccgctggccaacccg
cgcaacgccgccgccggttcgctgcgccagaaggacccggagcagaccgccaagcgcccg
ctgcgcatgttcgtgcacgggctggggcgcagccgcgacttccccatcacggagcagtcc
caggcctacgaactcatgcgcggctgggggcttccggtctccccgtacggccgcgtggtc
gagtcgctggctcgggtgcgggacttcatcgccgagcacggcgagaagcgccatgaactg
atccacgacatcgacggcatcgtggtgaaggtcgacgacctgtccacccaggagcagctg
ggctacacctcccgcgtgccgcgctgggccgtggcctacaagtacccgccggaagaagtg
cacaccaagctgctggacatccaggtccaggtgggccgcaccggccgggtgacccccttc
ggcgtcatggaaccggtactggtggcagggtccacggtggcgcgcgcgaccctgcacaac
caggaagtcgtcaaggccaagaacgtgctgatcggggacaccgtcatcctgcgcaaggcc
ggcgacgtgatcccggagatcgtcggcccggtgctggcactgcgcgacggcagcgaaact
gctttcatcatgcccaccgaatgcccgtcctgcggccagccgctggctccggccaaggag
ggggacgtggacatccgctgcctgaacgcggaatcatgcccggtccagctcaccgaacgc
gtcgcctacctgggcggccgcagcgccctggacatcgaggcgctgggctacgaggcggcc
gccgcgctgaccagcggcccgggcgaggacccggccacgcagggcggggtgatcctgccg
gcaggcccgggcccgctgcacaacgaggcggagctcttcgacctgaaggacaagctggat
ctgctggccgaggtcaaggtctggcgcgaaaagcgcgtgaagggcgaggggaccggaaag
ttcgacctggtgccctacttctttacgaaggctaccgcgaagaagccgtcggtgccgacc
aagagcacgcaaaagctcttcgacgagctggaaaaggcgaaaggcaatccgctgtggcgt
gtgctggtggcgctgtccatccgccacgtcggacccaacgcctcccgcgccatcgccacc
cgctacggttcaatggacgcgctgcttgaggtcatcgacgcaggcaacgcggtggaggaa
ctgagccagatcgactcggtgggctccatcatcgccgaggcgctggtcgactggttcaag
gtcgactggcatcgggacatcgtctccgcctggcaggcggccggggtgaagatggtcgac
gaacgcgacgagaacatcaccaagaacctcgaaggcctggccatcgtggtcaccggaacg
atggagaactattcgcgcgacaccgccaaggaagcgatcatcgtgcgcggcggcaaggcg
accggcagcgtatcgaagaagaccgatttcctggtggccggcgaggccgccgggtcgaag
ctggacaaggcccggtccctgggggtcccggtactggacgaagccggtttcggcatcctg
ctggagcaggggccggaggcggcccgcgaggcggcgcttcccgcgccggaaggagaataa
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