Paraglaciecola psychrophila: C427_3058
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Entry
C427_3058 CDS
T02535
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gps
Paraglaciecola psychrophila
Pathway
gps03030
DNA replication
gps03410
Base excision repair
gps03420
Nucleotide excision repair
gps03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gps00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C427_3058
03410 Base excision repair
C427_3058
03420 Nucleotide excision repair
C427_3058
03430 Mismatch repair
C427_3058
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gps03032
]
C427_3058
03400 DNA repair and recombination proteins [BR:
gps03400
]
C427_3058
Enzymes [BR:
gps01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
C427_3058
DNA replication proteins [BR:
gps03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
C427_3058
DNA repair and recombination proteins [BR:
gps03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
C427_3058
NER (nucleotide excision repair)
GGR (global genome repair) factors
C427_3058
MMR (mismatch excision repair)
DNA ligase
C427_3058
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
C427_3058
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
DZR_2
MazE_antitoxin
Motif
Other DBs
NCBI-ProteinID:
AGH45167
UniProt:
K7A8P0
LinkDB
All DBs
Position
complement(2910650..2912689)
Genome browser
AA seq
679 aa
AA seq
DB search
MAASQEIINQLALLKTSIAECNYQYYVLDNPSVPDAEYDRQMQALQIIEQKYPELLTDDS
PSQKVGDMPLPEFEQVAHEVPMLSLDNAFDKDSFLAFEKRMQDRLKDDAEISYSCEPKLD
GLAVSLLYENGKLVRGATRGDGRVGENITSNVRTIRNIPLTLRGDNYPERLEVRGEVIMT
RDGFARLNKTQVEHDKKAFANPRNAAAGSLRQLDSRITAKRPLLFFSYSLGLVENEQYPL
ADSHSARLKQLSDWGLPLSKELQVAQGAEACLDYYQHLGNIRDALNYDIDGVVFKADNIE
LQQQLGFVARAPRWAIAHKFPAQEEMTVVQDVEFQVGRTGAITPVARLEPVFVGGVTVSN
ATLHNQDEIQRLGLKIGDTVIIRRAGDVIPQVVSVIVDKRPDNARDIVFPETCPICDSAI
EKLEDEVVARCTGGLYCAAQLKESMKHFASRKAFDIDGLGDKIIEQLVDQKLVKTPADFF
KLEFMQISNLDRMGEKSAANLIQSLEKCKQTTLAKFMYSLGIREVGEATATNLAAYFCDL
ETIKKADLESLQEVSDVGAIVAQHVVNFFAEEHNVQVIDELLVAGIHWPKIDKIEVDSLP
LAGQTFVLTGTLEQMDRNAAKAMLQSLGAKVAGSVSAKTSCVVAGEKAGSKLAKAEELGV
KVLNEQQMLDMFTELGELI
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggcagcctcgcaagagattattaatcaactcgctttacttaaaaccagcattgcagaa
tgtaactatcaatattatgtattagacaatcctagtgtgcctgatgccgagtacgacagg
cagatgcaagcattacagataatagaacaaaaatatccagaattattgaccgatgattca
cccagtcaaaaagtaggggatatgcccttacctgaatttgaacaggtggctcacgaggtg
cctatgttgtcgttggacaatgccttcgataaagactcatttttagcatttgaaaaaagg
atgcaagacaggctcaaagacgatgctgaaattagctatagttgcgagcccaagctagac
ggtttagctgttagcttgttatatgagaacggtaaattagttcgcggagctacacgtggt
gatggacgtgtgggtgaaaatattacgtccaacgtgcgcactattcgcaatattccatta
acattacgcggtgacaattacccggaacgtttggaagtgcgtggtgaagtgatcatgacc
cgagatggttttgcccgactaaacaaaactcaagtagagcatgacaaaaaagcgttcgcc
aatccccgcaatgctgccgcaggtagcttacgacaattggactctcgcattactgctaag
cgcccgctgttattttttagttattcgttaggtttggtcgaaaacgaacaatatccatta
gcggatagtcattcagccagattaaaacagttaagcgattggggtttacctttaagtaaa
gagttacaagtcgcccaaggtgcagaggcgtgtttagattattatcagcatttaggtaat
attcgtgatgcacttaattacgatattgatggtgttgtgtttaaagctgacaacattgaa
ttgcaacaacagcttggttttgttgcccgtgcgccgcgttgggccattgcccataaattc
ccagctcaggaagaaatgacggtggtgcaagatgttgaatttcaggtgggacgaacaggt
gccatcacacctgtggcaaggttagagcccgtttttgtgggtggtgtaaccgtatctaat
gctacattgcataaccaagatgaaattcaacgtcttggtttaaaaataggcgacaccgtg
atcatcagacgggcaggggatgtgatcccgcaagttgtgtcagtaattgttgataaacgt
cccgacaatgcacgagacatagtgtttccagaaacgtgtccaatctgcgactcagctatc
gaaaaacttgaagacgaagtcgtagcaagatgtaccggcggcctttattgtgctgcccag
cttaaagaatcaatgaaacattttgcctcgcgaaaagcgtttgatattgatggcttaggc
gataaaattatcgaacaattagtcgaccaaaaattagtcaaaacacctgcggattttttc
aagttagagtttatgcaaatttctaatttagatcggatgggcgaaaaatctgctgctaat
ttaattcaatctctagagaaatgtaaacaaaccacattagctaagtttatgtattcacta
ggtattcgagaagtaggtgaggccacagcgacaaacttagctgcgtacttctgtgatttg
gaaacgattaagaaagccgatttggaaagtttacaagaagtaagtgacgtaggcgcaatt
gtggctcagcacgtcgttaacttttttgcagaagagcataatgttcaagtaatcgacgaa
ttattagtggcagggatacactggcctaaaattgacaaaatagaggtggattctttacct
cttgcagggcaaacctttgtgcttacaggaactctagaacaaatggacagaaatgccgct
aaggctatgcttcaatctttgggtgcaaaagtagcgggaagcgtgtctgctaaaactagt
tgtgtagtagcgggtgaaaaggctggctctaagttagcaaaagctgaagaactaggcgtt
aaggtacttaatgaacaacaaatgttggatatgtttactgaacttggagagcttatttag
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