Gardnerella piotii: K9E43_03905
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Entry
K9E43_03905 CDS
T08320
Symbol
nth
Name
(GenBank) endonuclease III
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
gpt
Gardnerella piotii
Pathway
gpt03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
gpt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
K9E43_03905 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gpt03400
]
K9E43_03905 (nth)
Enzymes [BR:
gpt01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
K9E43_03905 (nth)
DNA repair and recombination proteins [BR:
gpt03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
K9E43_03905 (nth)
Prokaryotic type
K9E43_03905 (nth)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
EndIII_4Fe-2S
RecR_HhH
DUF2400
IMS_HHH
HHH_5
INTS15
DUF4294
Motif
Other DBs
NCBI-ProteinID:
UQA81543
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All DBs
Position
1020449..1021075
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AA seq
208 aa
AA seq
DB search
MREEYRILCEEIPNPKCALNFTNPFELLIATVLSAQTTDKRVNLVTSKLFKAYPTPVDLA
KAQIYNVQEIIHSLGFYRVKSQHIIELSQKLVKDFNGIVPNNMADLTKLPGVGRKTANVV
LGNAFKIPGFPVDTHVMRVTSRLGWVSEASAKAKDAAKIEREVTACFAPEEWTNLSHRLI
LHGRMFCTARNPRCGDCPLRFLCPSVRL
NT seq
627 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgaagaatataggattttatgcgaagaaatcccaaatccaaaatgtgcgctaaat
tttacgaacccatttgagcttttaatcgcaactgttcttagcgcgcaaacaaccgataag
cgcgtaaatcttgttacgagtaagctttttaaggcatacccaacgccagtcgatttggca
aaagcacaaatatacaacgtgcaagaaataattcattcgcttggattttatagagtaaaa
tcgcaacatattattgagctttcgcaaaaacttgttaaagattttaatggcattgttcca
aataatatggctgatcttacaaagttaccaggagtgggaagaaaaacagcaaacgttgtt
ttagggaacgcttttaagattccaggatttccagtagatacgcatgttatgcgcgttacg
tcaagactcggctgggtgagtgaggctagcgctaaggctaaagatgcagcgaagatcgag
agagaagtcacagcttgttttgcgccagaagaatggactaatctttctcatcgtcttatt
ttgcacggaagaatgttttgcactgctagaaaccctcgctgtggcgattgtccgcttagg
tttttgtgtccttctgttagattgtag
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