PATHWAY: gra01100 Help Entry gra01100          Global    Pathway                                 Name Metabolic pathways - Gossypium raimondii Class BRITE hierarchy Pathway map gra01100   Metabolic pathways Module gra_M00001   Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:gra01100] gra_M00002   Glycolysis, core module involving three-carbon compounds [PATH:gra01100] gra_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:gra01100] gra_M00004   Pentose phosphate pathway (Pentose phosphate cycle) [PATH:gra01100] gra_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:gra01100] gra_M00006   Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:gra01100] gra_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:gra01100] gra_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:gra01100] gra_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:gra01100] gra_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:gra01100] gra_M00012   Glyoxylate cycle [PATH:gra01100] gra_M00015   Proline biosynthesis, glutamate => proline [PATH:gra01100] gra_M00018   Threonine biosynthesis, aspartate => homoserine => threonine [PATH:gra01100] gra_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:gra01100] gra_M00020   Serine biosynthesis, glycerate-3P => serine [PATH:gra01100] gra_M00021   Cysteine biosynthesis, serine => cysteine [PATH:gra01100] gra_M00022   Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:gra01100] gra_M00023   Tryptophan biosynthesis, chorismate => tryptophan [PATH:gra01100] gra_M00026   Histidine biosynthesis, PRPP => histidine [PATH:gra01100] gra_M00027   GABA (gamma-Aminobutyrate) shunt [PATH:gra01100] gra_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:gra01100] gra_M00034   Methionine salvage pathway [PATH:gra01100] gra_M00036   Leucine degradation, leucine => acetoacetate + acetyl-CoA [PATH:gra01100] gra_M00040   Tyrosine biosynthesis, chorismate => arogenate => tyrosine [PATH:gra01100] gra_M00044   Tyrosine degradation, tyrosine => homogentisate [PATH:gra01100] gra_M00046   Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:gra01100] gra_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:gra01100] gra_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:gra01100] gra_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:gra01100] gra_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:gra01100] gra_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:gra01100] gra_M00072   N-glycosylation by oligosaccharyltransferase [PATH:gra01100] gra_M00073   N-glycan precursor trimming [PATH:gra01100] gra_M00081   Pectin degradation [PATH:gra01100] gra_M00082   Fatty acid biosynthesis, initiation [PATH:gra01100] gra_M00083   Fatty acid biosynthesis, elongation [PATH:gra01100] gra_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:gra01100] gra_M00087   beta-Oxidation [PATH:gra01100] gra_M00089   Triacylglycerol biosynthesis [PATH:gra01100] gra_M00092   Phosphatidylethanolamine (PE) biosynthesis, ethanolamine => PE [PATH:gra01100] gra_M00094   Ceramide biosynthesis [PATH:gra01100] gra_M00095   C5 isoprenoid biosynthesis, mevalonate pathway [PATH:gra01100] gra_M00096   C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:gra01100] gra_M00097   beta-Carotene biosynthesis, GGAP => beta-carotene [PATH:gra01100] gra_M00098   Acylglycerol degradation [PATH:gra01100] gra_M00099   Sphingosine biosynthesis [PATH:gra01100] gra_M00100   Sphingosine degradation [PATH:gra01100] gra_M00112   Tocopherol/tocotorienol biosynthesis, homogentisate + phytyl/geranylgeranyl-PP => tocopherol/tocotorienol [PATH:gra01100] gra_M00113   Jasmonic acid biosynthesis [PATH:gra01100] gra_M00114   Ascorbate biosynthesis, plants, fructose-6P => ascorbate [PATH:gra01100] gra_M00115   NAD biosynthesis, aspartate => quinolinate => NAD [PATH:gra01100] gra_M00118   Glutathione biosynthesis, glutamate => glutathione [PATH:gra01100] gra_M00120   Coenzyme A biosynthesis, pantothenate => CoA [PATH:gra01100] gra_M00123   Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:gra01100] gra_M00125   Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:gra01100] gra_M00126   Tetrahydrofolate biosynthesis, GTP => THF [PATH:gra01100] gra_M00132   Inositol phosphate metabolism, Ins(1,3,4)P3 => phytate [PATH:gra01100] gra_M00134   Polyamine biosynthesis, arginine => ornithine => putrescine [PATH:gra01100] gra_M00137   Flavanone biosynthesis, phenylalanine => naringenin [PATH:gra01100] gra_M00138   Flavonoid biosynthesis, naringenin => pelargonidin [PATH:gra01100] gra_M00142   NADH:ubiquinone oxidoreductase, mitochondria [PATH:gra01100] gra_M00143   NADH dehydrogenase (ubiquinone) Fe-S protein/flavoprotein complex, mitochondria [PATH:gra01100] gra_M00145   NAD(P)H:quinone oxidoreductase, chloroplasts and cyanobacteria [PATH:gra01100] gra_M00148   Succinate dehydrogenase (ubiquinone) [PATH:gra01100] gra_M00151   Cytochrome bc1 complex respiratory unit [PATH:gra01100] gra_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:gra01100] gra_M00161   Photosystem II [PATH:gra01100] gra_M00163   Photosystem I [PATH:gra01100] gra_M00168   CAM (Crassulacean acid metabolism), dark [PATH:gra01100] gra_M00169   CAM (Crassulacean acid metabolism), light [PATH:gra01100] gra_M00170   C4-dicarboxylic acid cycle, phosphoenolpyruvate carboxykinase type [PATH:gra01100] gra_M00171   C4-dicarboxylic acid cycle, NAD - malic enzyme type [PATH:gra01100] gra_M00172   C4-dicarboxylic acid cycle, NADP - malic enzyme type [PATH:gra01100] gra_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:gra01100] gra_M00364   C10-C20 isoprenoid biosynthesis, bacteria [PATH:gra01100] gra_M00366   C10-C20 isoprenoid biosynthesis, plants [PATH:gra01100] gra_M00368   Ethylene biosynthesis, methionine => ethylene [PATH:gra01100] gra_M00371   Castasterone biosynthesis, campesterol => castasterone [PATH:gra01100] gra_M00372   Abscisic acid biosynthesis, beta-carotene => abscisic acid [PATH:gra01100] gra_M00415   Fatty acid elongation in endoplasmic reticulum [PATH:gra01100] gra_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:gra01100] gra_M00527   Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine [PATH:gra01100] gra_M00531   Assimilatory nitrate reduction, nitrate => ammonia [PATH:gra01100] gra_M00549   UDP-Glc biosynthesis, Glc => UDP-Glc [PATH:gra01100] gra_M00555   Betaine biosynthesis, choline => betaine [PATH:gra01100] gra_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:gra01100] gra_M00621   Glycine cleavage system [PATH:gra01100] gra_M00854   Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:gra01100] gra_M00880   Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:gra01100] gra_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:gra01100] gra_M00882   Lipoic acid biosynthesis, eukaryotes, octanoyl-ACP => dihydrolipoyl-H [PATH:gra01100] gra_M00897   Thiamine biosynthesis, plants, AIR (+ NAD+) => TMP/thiamine/TPP [PATH:gra01100] gra_M00899   Thiamine salvage pathway, HMP/HET => TMP [PATH:gra01100] gra_M00910   Phenylalanine biosynthesis, chorismate => arogenate => phenylalanine [PATH:gra01100] gra_M00916   Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P [PATH:gra01100] gra_M00927   Gibberellin A12 biosynthesis, GAPP => GA12 [PATH:gra01100] gra_M00928   Gibberellin A4/A1 biosynthesis, GA12/GA53 => GA4/GA1 [PATH:gra01100] gra_M00932   Phylloquinone biosynthesis, chorismate (+ phytyl-PP) => phylloquinol [PATH:gra01100] gra_M00933   Plastoquinone biosynthesis, homogentisate + solanesyl-PP => plastoquinol [PATH:gra01100] gra_M00936   Melatonin biosynthesis, plants, tryptophan => serotonin => melatonin [PATH:gra01100] gra_M00938   Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:gra01100] gra_M00940   Flavanone biosynthesis, p-coumaroyl-CoA => liquiritigenin [PATH:gra01100] gra_M00970   Proline degradation, proline => glutamate [PATH:gra01100] gra_M00972   Proline metabolism [PATH:gra01100] gra_M00987   Assimilatory sulfate reduction, plants, sulfate => H2S [PATH:gra01100] Organism Gossypium raimondii [GN:gra] Related pathway gra00010   Glycolysis / Gluconeogenesis gra00020   Citrate cycle (TCA cycle) gra00030   Pentose phosphate pathway gra00040   Pentose and glucuronate interconversions gra00051   Fructose and mannose metabolism gra00052   Galactose metabolism gra00053   Ascorbate and aldarate metabolism gra00061   Fatty acid biosynthesis gra00062   Fatty acid elongation gra00071   Fatty acid degradation gra00073   Cutin, suberine and wax biosynthesis gra00100   Steroid biosynthesis gra00130   Ubiquinone and other terpenoid-quinone biosynthesis gra00190   Oxidative phosphorylation gra00195   Photosynthesis gra00196   Photosynthesis - antenna proteins gra00220   Arginine biosynthesis gra00230   Purine metabolism gra00232   Caffeine metabolism gra00240   Pyrimidine metabolism gra00250   Alanine, aspartate and glutamate metabolism gra00260   Glycine, serine and threonine metabolism gra00261   Monobactam biosynthesis gra00270   Cysteine and methionine metabolism gra00280   Valine, leucine and isoleucine degradation gra00290   Valine, leucine and isoleucine biosynthesis gra00300   Lysine biosynthesis gra00310   Lysine degradation gra00330   Arginine and proline metabolism gra00340   Histidine metabolism gra00350   Tyrosine metabolism gra00360   Phenylalanine metabolism gra00380   Tryptophan metabolism gra00400   Phenylalanine, tyrosine and tryptophan biosynthesis gra00410   beta-Alanine metabolism gra00430   Taurine and hypotaurine metabolism gra00440   Phosphonate and phosphinate metabolism gra00450   Selenocompound metabolism gra00460   Cyanoamino acid metabolism gra00470   D-Amino acid metabolism gra00480   Glutathione metabolism gra00500   Starch and sucrose metabolism gra00510   N-Glycan biosynthesis gra00511   Other glycan degradation gra00513   Various types of N-glycan biosynthesis gra00514   Other types of O-glycan biosynthesis gra00520   Amino sugar and nucleotide sugar metabolism gra00531   Glycosaminoglycan degradation gra00540   Lipopolysaccharide biosynthesis gra00541   Biosynthesis of various nucleotide sugars gra00543   Exopolysaccharide biosynthesis gra00561   Glycerolipid metabolism gra00562   Inositol phosphate metabolism gra00563   Glycosylphosphatidylinositol (GPI)-anchor biosynthesis gra00564   Glycerophospholipid metabolism gra00565   Ether lipid metabolism gra00590   Arachidonic acid metabolism gra00591   Linoleic acid metabolism gra00592   alpha-Linolenic acid metabolism gra00600   Sphingolipid metabolism gra00601   Glycosphingolipid biosynthesis - lacto and neolacto series gra00603   Glycosphingolipid biosynthesis - globo and isoglobo series gra00604   Glycosphingolipid biosynthesis - ganglio series gra00620   Pyruvate metabolism gra00630   Glyoxylate and dicarboxylate metabolism gra00640   Propanoate metabolism gra00650   Butanoate metabolism gra00660   C5-Branched dibasic acid metabolism gra00670   One carbon pool by folate gra00710   Carbon fixation by Calvin cycle gra00730   Thiamine metabolism gra00740   Riboflavin metabolism gra00750   Vitamin B6 metabolism gra00760   Nicotinate and nicotinamide metabolism gra00770   Pantothenate and CoA biosynthesis gra00780   Biotin metabolism gra00785   Lipoic acid metabolism gra00790   Folate biosynthesis gra00860   Porphyrin metabolism gra00900   Terpenoid backbone biosynthesis gra00901   Indole alkaloid biosynthesis gra00902   Monoterpenoid biosynthesis gra00904   Diterpenoid biosynthesis gra00905   Brassinosteroid biosynthesis gra00906   Carotenoid biosynthesis gra00908   Zeatin biosynthesis gra00909   Sesquiterpenoid and triterpenoid biosynthesis gra00910   Nitrogen metabolism gra00920   Sulfur metabolism gra00940   Phenylpropanoid biosynthesis gra00941   Flavonoid biosynthesis gra00942   Anthocyanin biosynthesis gra00943   Isoflavonoid biosynthesis gra00944   Flavone and flavonol biosynthesis gra00950   Isoquinoline alkaloid biosynthesis gra00960   Tropane, piperidine and pyridine alkaloid biosynthesis gra00965   Betalain biosynthesis gra00966   Glucosinolate biosynthesis gra00999   Biosynthesis of various plant secondary metabolites gra01040   Biosynthesis of unsaturated fatty acids KO pathway ko01100

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