Gossypium raimondii: 105782478
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Entry
105782478 CDS
T04129
Name
(RefSeq) LOW QUALITY PROTEIN: 110 kDa U5 small nuclear ribonucleoprotein component CLO
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
gra
Gossypium raimondii
Pathway
gra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105782478
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gra03041
]
105782478
Spliceosome [BR:
gra03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
105782478
Complex C
U5 SnRNP specific factors
105782478
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFL1
EFG_III
MMR_HSR1
Roc
Ras
Motif
Other DBs
NCBI-GeneID:
105782478
NCBI-ProteinID:
XP_052482246
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All DBs
Position
13:50748434..50754141
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AA seq
990 aa
AA seq
DB search
MDDNLYDEFGNYIGPDIESDQGSEGEEEEDEDLPDRHVQEEGQQSDGEAPDGVSNGWITA
ANDVDMDNQIVLAEDKKYYPTAEEVYGEDVETLVMDEDEQPLEQPIIKPVKNIKFEVGVK
DSSTYVSTQFLIGLMSNPGLIRNVALIGHLXHGKTVFMDMLVEQTHHINTFDQNSEKHMR
YTYTRIDEQERRISIKAIPMSLVLKDSNGKSYLCNIMDTPGHVNFSDEMTAALRLADGAV
LIVDAAEGVMVNTERAIRHAIQDRIPIVVVINKVDRLITELKLPPKDAYHKLRHTLEVIN
NHISAASTTAGNVPVIDPAAGNVCFASASAGWSFTLQSFAKLYVKLHGIPFDAEKFASCL
WGDIYYHPDTRAFKRKPPAGGGERSFVEFVLEPLYKIYSQVIGEHRKSVESTLAELGVTL
SNAAYKLNVRPLLRMACSTVFGSASGFTDLLVQHIPSPKDAAAKKVDHTYTGPKHSMIYK
AMVECDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGRIQTGQSLRVLGEGYSPDDEEDMT
LKEVTKLWIYQARYRIPISSAPPGSWVLIEGVDASIMKTPTLCNMDLDEDVYIFRPLQFN
TLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKLEESGEHTILGTGELYLDSIMKD
LRELSSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIENG
VVSVDWSRKQLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKGLLGSVR
DSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIASEPLHRGSGQIIPTARRVAYSAFLMA
TPRLMEPVYYVEIQTPIDCVSAIYTVLSCRRGHVTADVPQPGTPAYIVKAFLPVIESFGF
ETDLRYHTQGQAFCLSVFNHWAIVPGDPLDKSIILRPLEPAPIQHLAREFMVKTRRRKGM
SEDVSINKFFDEAMVVELALQAADLHQQMI
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atggatgataacttgtatgatgaatttggtaactatattggacctgatatcgagtcagac
caagggagtgaaggtgaggaagaagaagatgaagaccttcctgacaggcatgtccaagag
gagggacaacaatctgatggggaggctccagatggggtgtctaatggatggattacagct
gctaatgatgttgatatggataatcagattgttcttgctgaggacaagaagtattaccca
actgcggaagaggtttatggtgaggatgttgagaccttggttatggatgaagatgagcag
cctcttgagcaacctattatcaagcctgttaagaatatcaagtttgaggtcggagttaag
gattcttcgacttatgtgtcgacccagtttcttattggtttgatgtcaaacccgggtttg
atccgcaatgttgccctcattggacacttgtagcatgggaagacggtgtttatggacatg
ttggttgagcaaacccaccatatcaacacgtttgatcaaaatagtgagaagcacatgaga
tacacttatacaagaattgatgagcaagaaagaaggatatctattaaggcaatcccgatg
tcacttgttcttaaggacagtaatgggaaatcctatctctgtaatatcatggacactcct
ggtcatgtgaatttttctgatgaaatgactgctgctcttaggcttgctgacggtgccgtg
ttgattgttgatgcagctgaaggagtgatggtaaatactgagagggctatacgccatgca
atacaggaccgcatacctattgtagttgttataaacaaagttgaccggctgataacagaa
cttaagttgccccccaaggatgcttatcataaactaaggcataccctggaagtaattaat
aaccatatatctgcagcctctacaaccgctggtaatgttccagttattgatcctgctgct
ggaaatgtttgttttgctagtgcaagtgcaggatggtccttcactttgcagtcatttgca
aaattatatgtcaaactacatggaattccatttgatgctgagaagtttgcatcttgtctt
tggggtgatatttattatcatcctgataccagggcttttaaaaggaaaccccctgctggc
ggaggagaacgatcatttgttgaatttgtgcttgaacccctttataagatatatagccaa
gtgattggtgaacataggaagagtgtagagtcgactctcgcagagttgggtgtcactctt
agcaatgctgcttacaagttaaatgttaggcctttgctaaggatggcttgcagcacagtt
tttggttcagcctcaggcttcactgatttgctggttcaacacataccatctccaaaggat
gctgcagctaagaaggtcgatcacacttacacaggacctaaacattctatgatttacaag
gccatggtagaatgtgatccatctggtccccttatggtcaatgtgaccaaactatatccc
aagtccgattgtagtgttttcgatgcttttggtagggtttacagtggtagaattcaaact
gggcagtctttgagagtactgggagaaggctattcaccagatgacgaggaggacatgaca
ttaaaagaagtaaccaaattatggatctaccaagctcgatacagaatacctataagcagt
gctcctcctggttcttgggttcttattgaaggtgttgatgcttcaattatgaaaactccc
accctctgtaatatggatcttgatgaagatgtatacattttccggccgttacagtttaat
actcttcctgttgtaaaaacagctactgagcctttaaatcctagtgagttgcccaaaatg
gtggaggggcttcggaagatcagcaaaagctatcctctagcaattactaaacttgaggaa
tctggtgagcacactatattaggtactggagagttgtacttggactcaattatgaaggac
cttagggagctttcttcagaggtggaagttaaggtggcagatcctgttgtttcattctgt
gaaacagtggtggagtcttcatccatgaaatgctttgctgaaacacccaacaagaagaat
aaaataaccatgattgcagagccattggagagaggtcttgcagaggacattgagaatggt
gttgtaagtgttgactggagtcggaagcaacttggtgacttcttcaagacaaaatatgac
tgggatttgcttgctgcacgttccatctgggcatttggccctgataagcagggacctaac
attttattagatgatacactccctactgaggttgacaagggattgttgggatctgtcagg
gattctattgtccaaggatttcagtggggtgctcgagaaggacctctctgtgatgaacct
attagaaatgtgaagttcaaaatagttgatgcaaggattgcatctgaaccattgcatcga
ggatctggacagatcatccccacagctcgacgtgtggcctattcagctttccttatggcg
accccacggcttatggaacctgtatattatgtggagatacaaacaccaatcgactgtgtc
tctgctatctacacggtgttgtcttgtaggcgtggtcatgttacagctgatgtgccacag
ccaggaaccccggcctatattgtgaaggcatttttacctgtgatagagtcattcggattt
gagacagacctgaggtaccacacacaaggtcaagccttttgtctctcagtattcaaccac
tgggccatagttcctggagaccctttggacaagagcattattttgcgacctcttgaaccc
gcaccaatacagcaccttgctcgggagttcatggtaaagacaaggcgtagaaagggaatg
agtgaagatgtgagcatcaacaagttcttcgacgaggctatggtggtggagctagctctg
caggctgccgatcttcatcagcagatgatataa
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