Gossypium raimondii: 105782657
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Entry
105782657 CDS
T04129
Name
(RefSeq) 5'-3' exoribonuclease 4
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
gra
Gossypium raimondii
Pathway
gra04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
105782657
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gra03019
]
105782657
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
105782657
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
zf-CCHC_4
Motif
Other DBs
NCBI-GeneID:
105782657
NCBI-ProteinID:
XP_012462991
UniProt:
A0A0D2SCP2
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All DBs
Position
13:complement(32265450..32276729)
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AA seq
941 aa
AA seq
DB search
MGVPAFYRWLADRYPQSIVDVIEEEPREDGNGNQIPVDVSKANPNRLEFDNLYLDMNGII
HPCFHPDGKPAPATYDDVFKSIFDYIDHLYSLVRPRKLLYMAIDGVAPRAKMNQQRTRRF
RAAKDAAEAAAEEERLREEFEAEGKALSHIGKPETCDSNVITPGTPFMGVLSVALQYYIQ
SRLNHNPGWKTTKVILSDSNVPGEGEHKIMSYIRLQRNLPGFNPNTRHCLYGLDADLIML
SLATHEVHFSILREVITLPGQQEKCFLCGRVGHLAAECDGKPDNGTGELNAVDDTPIHKK
KYQFLNIWVLREYLQYDLEIPNPPFEINFERIVDDFVFLCFFVGNDFLPHMPTLEIREGA
INLLMQAYRRDFASMGGYLTDAGEVLLDRVECFIQSVSVHEDQIFQKRTRIQQAYENNER
MKLKARGEDSEEARPPLVDKIKLGEPGYKERYYAEKFSVSNPGEIEEVRRDVVLKYVEGL
CWVCQYYYQGVCSWQWFYPYHYAPFASDLKDLTDLEITFFMGKPFKPFDQLMGTLPAASS
KALPEEYGKLMTEPSSPIYSFYPSDFEIDMHGKRFAWQGVVKLPFIDEWKLLSATRKLEA
TLTAEEQFRNSVMLDLLYVHPLHPLASQVLSYYYQFSPHKKNLWPIDTNASGGMNGFLWL
CERNGWQVVVPSPVKELPHIESNQILNVTYMNPSYHKHIPELPQDVVTPKKILTPIDIKP
FPVLWHEDNGGRRQQGRDRSRLPGAIVGPQLGEAAHRLVKNTLNIIPNGSSSGLFEQPPS
FNVSSNYTIIKQRPARPSGFERGFFDDPSLSYSSRPRAAGLSGGRGYSDGPNYYGQYNHL
NGVMANPRHPSSNGMQVNRNNFLAQDRLHHQERYHDLRTGMSALSFEGSGRGAIHVEMSS
RMPNPGYLRNLDHRSEQNTISPPIPTKWINMPENINAGTYN
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccggcgttttaccggtggttagcagatcggtacccgcagtcgatcgtcgac
gtgatcgaggaagaaccgagagaagacggtaatggaaatcaaataccagttgacgtctct
aaggctaaccctaaccgcctcgaattcgataatctttatcttgatatgaatgggattatt
cacccttgttttcacccagacggcaagcctgcacctgccacttatgatgatgtattcaaa
tcaatctttgactatattgaccatctatattcattggttcgtcctagaaagcttctatat
atggcaattgatggtgttgcacctagagctaaaatgaatcaacaacgtactcgacgcttt
agagctgcaaaagatgctgctgaggctgcagctgaagaggagagattgagggaagagttc
gaggctgaggggaaagctttgtcccacattggaaaaccggaaacatgtgactcaaatgtt
attactcctggcactccatttatgggtgttttgtctgtagcacttcagtattacatacaa
tccaggttgaatcataatcctggctggaagactacaaaggttattctttctgattcaaac
gttcccggtgagggcgaacacaagattatgtcatacattcggttacaacgtaaccttcct
ggcttcaatccaaacactcgacactgtttgtatggtctggatgctgatttgatcatgttg
tccttagccacccatgaggttcacttttcaattttaagagaggtgatcactcttcctgga
caacaagaaaaatgttttttatgtggtcgagttggtcatctggcagctgagtgcgatggt
aagccagataatggaactggagaattgaatgctgtggatgatacaccaattcacaagaag
aaatatcagtttcttaacatatgggtgttgcgagaatatttacaatatgatttggagatc
cccaaccccccatttgagataaactttgaacgaatagtggatgattttgtttttttatgt
ttttttgtgggcaatgacttccttccacatatgccaacattagaaatcagggagggtgct
ataaatcttctgatgcaagcttatagaagggattttgcttctatgggtggttatcttact
gatgcgggtgaggttttgttagatagagtggagtgttttattcaatctgtttctgttcat
gaagatcaaatctttcagaagaggactcgtatacagcaggcttatgagaataacgagcga
atgaagcttaaagcaagaggagaggactctgaggaggcacgaccacctcttgtagataag
attaaattaggggaaccaggatacaaagaaagatattatgctgagaaattcagtgtatca
aatccaggggagattgaagaagttagaagagatgttgttttgaagtatgttgaaggttta
tgttgggtatgccagtattactaccaaggtgtttgctcttggcaatggttttatccatat
cattatgctccatttgcttcagatctgaaggatctaactgatttggaaataacatttttc
atgggaaagccatttaagccctttgatcagctcatgggaacactaccagcggccagttct
aaagctttgccagaagaatacgggaaactgatgacggaaccatcatcacctatctatagt
ttctatccctctgattttgagattgacatgcatggtaaacgctttgcatggcagggtgtt
gtcaagttgcctttcatcgatgagtggaagttgctttctgcaacaagaaagcttgaagct
actttaacggcagaagagcagtttcggaacagtgtgatgcttgatctgctatatgttcat
cctcttcatcctttggcttcacaagttctttcatattactatcagttctcccctcacaaa
aaaaatttatggccaattgacacaaatgctagtggtggaatgaacggatttctttggtta
tgtgaaaggaatggttggcaggttgtagtcccttcccctgttaaggagttgccacacata
gaatctaaccaaattttaaatgttacatacatgaatccttcatatcataaacacattcca
gaacttccacaggatgttgtaacacccaaaaagattctaactcctatagacattaaacct
tttcctgtattatggcatgaagataatggtgggcggcgtcagcaaggcagagatcggtca
cgactacctggagcaattgttggtcctcagctaggagaggcagctcatcgtcttgtcaag
aacacccttaatatcataccgaatggctcatcctcagggttatttgaacaaccaccgtct
tttaatgtctcaagcaactacacaattattaaacaaaggcctgctagaccatcaggtttt
gaaaggggcttttttgatgacccaagtctttcttatagtagtcgaccacgtgcagctgga
ctgtcaggtggaaggggatatagtgatggccctaattattatggtcaatataatcatctg
aatggtgtaatggctaacccaagacatccgtcatcaaatggtatgcaagttaacagaaac
aacttcctggcacaggatagattgcatcatcaggaacgttatcatgatttgagaactgga
atgtctgctttgtcatttgagggaagtggcagaggtgcaatacacgtagagatgtcttca
aggatgccaaatcctggatacttgcgaaatttagaccaccggtctgagcagaataccatc
agtcctcccattcctaccaagtggatcaatatgccagagaacataaatgctggaacttat
aactag
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