Gossypium raimondii: 105783507
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Entry
105783507 CDS
T04129
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO isoform X1
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
gra
Gossypium raimondii
Pathway
gra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105783507
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gra03041
]
105783507
Spliceosome [BR:
gra03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
105783507
Complex C
U5 SnRNP specific factors
105783507
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
Roc
Septin
Ras
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
105783507
NCBI-ProteinID:
XP_012464462
UniProt:
A0A0D2U776
LinkDB
All DBs
Position
13:57798795..57806916
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AA seq
990 aa
AA seq
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MDDNLYDEFGNYIGPDIESDQGSEGEEEEDEDLPDRHVQEEGQQSDGEAPDGVSNGWITA
ANDVDMDNQIVLAEDKKYYPTAEEVYGEDVETLVMDEDEQPLEQPIIKPVKNIKFEVGVK
DSSTYVSTQFLIGLMSNPGLIRNVALVGHLQHGKTVFMDMLVEQTHHMNTFDRNSEKHMR
YTDTRIDEQERRISIKAVPMSLVLEDSNGKSYLCNIMDTPGHVNFSDEMTAALRLADGAV
LIVDAAEGVMVNTERAIRHAIQERIPIVVVINKVDRLITELKLPPKDAYHKLRHTLEVIN
NHISAASTTAGNVPVIDPAAGNVCFASASAGWCFTLQSFAKLYVKLHGIPFDAEKFASRL
WGDIYYHPDTRAFKRKPPAGGGERSFVEFVLEPLYKIYSQVIGEHRKSVESTLAELGVTL
SNAAYKLNVRPLLRLACSTVFGSASGFTDLLVQHIPSPKDAAAKKVDHTYTGPKHSMIYK
AMVECDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGRIQTGQSLRVLGEGYSPDDEEDMT
LKEVTKLWIYQARYRIPISSAPPGSWVLIEGVDASIMKTATLCNMDLDEDVYIFRPLQFN
TLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKD
LRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIENG
VVSVDWSRKQLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKGLLGSVR
DSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIASEPLHRGSGQIIPTARRVAYSAFLMA
TPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGF
ETDLRYHTQGQAFCLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGM
SEDVSINKFFDEAMVVELAQQAADLHQQMI
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atggatgataacttgtatgatgaatttggtaactatattggacctgatatcgagtcagac
caagggagtgaaggtgaggaagaagaagatgaagaccttcctgacaggcatgtccaagag
gagggacagcaatctgatggggaggctccagatggggtgtctaatggatggattacagct
gctaatgatgttgatatggataatcagattgttcttgctgaggacaagaagtattaccca
actgcggaagaggtttatggtgaggatgttgagaccttggttatggatgaagatgagcag
cctcttgagcaacctattatcaagcctgttaagaatatcaagtttgaggtcggagttaag
gattcttcgacttatgtgtcgacccagtttcttattggtttgatgtcaaacccgggtttg
atccgcaatgttgccctcgttggacacttgcaacatgggaagacggtgtttatggacatg
ttggttgagcaaacccaccatatgaacacgtttgatcgaaatagtgagaagcacatgaga
tacactgatacaagaattgatgagcaagaaagaaggatatctattaaggcagtcccgatg
tcacttgttcttgaggacagtaatgggaaatcctatctctgtaatatcatggacactcct
ggtcatgtgaatttttctgatgaaatgactgctgctcttaggcttgctgacggtgccgtg
ttgattgttgatgcagctgaaggagtgatggtaaatactgagagggctatacgccatgca
atacaggaacgcatacctattgtagttgttataaacaaggttgaccggctgataacagaa
cttaagttgccccccaaggatgcttatcataaactaaggcataccctggaagtaattaat
aaccatatatctgcagcctctacaaccgctggtaatgttccagttattgatcctgctgct
ggaaatgtttgttttgctagtgcaagtgcaggatggtgcttcactttgcagtcatttgca
aaattatatgtaaaactacatggaattccatttgatgctgagaagtttgcatctcgtctt
tggggtgatatttattatcatcctgataccagggcttttaaaaggaaaccccctgctggc
ggaggagaacgatcatttgttgaatttgtgcttgaacccctttataagatatatagccag
gtgattggtgaacataggaagagtgtagagtctactctcgcagagttgggtgtcactctt
agcaatgctgcttacaagttaaatgttaggcctttgctaaggctggcttgcagcacagtt
tttggttcagcctcaggcttcactgatttgctggttcaacacataccatctccaaaggat
gctgcagctaagaaggttgatcacacttacacaggacctaaacattctatgatttacaag
gccatggtagaatgtgatccatctggtccccttatggtcaatgtgaccaaactatatccc
aagtccgattgtagtgttttcgatgcttttggtagggtttacagtggtagaattcaaact
gggcagtctttgagagtactgggagaaggctattcaccagatgacgaggaggacatgaca
ttaaaagaagtaaccaaattatggatctaccaagctcgatacagaatacctataagcagt
gctcctcctggttcttgggttcttattgaaggtgttgatgcttcaattatgaaaactgcc
accctctgtaatatggatcttgatgaagatgtatacattttccggccgttacagtttaat
acccttcctgttgtaaaaactgctactgagcctttaaatcctagtgagttgcccaaaatg
gtggaggggcttcggaagatcagcaaaagctatcctctagcaattactaaagttgaggaa
tctggtgagcacactatattaggtactggagagttgtacttggactcaattatgaaggac
cttagggagctttattcagaggtggaagttaaggtggcagatcctgttgtttcattctgt
gaaacagtggtggagtcttcatccatgaaatgctttgctgaaacacccaacaagaagaat
aaaataaccatgattgcagagccattggagagaggtcttgcagaggacattgagaatggt
gttgtaagtgttgactggagtcggaagcaacttggtgacttcttcaagacaaaatatgac
tgggatttgcttgctgcacgttccatctgggcatttggccctgataagcagggacctaat
attttattagatgatacactccctactgaggttgacaagggattgttgggatctgtcagg
gattctattgtccaaggatttcagtggggtgctcgagaaggacctctctgtgatgaacct
attagaaatgtgaagttcaaaatagttgatgcaaggattgcatctgaaccattgcatcga
ggatctggacagatcatccccacagctcgacgtgtggcctattcagctttccttatggcg
accccacggcttatggaacctgtatattatgtggagatacaaacaccaattgactgtgtc
tctgctatctacacggtgttgtctcgtaggcgtggtcatgttacagctgatgtgccacag
ccaggaaccccggcctatattgtgaaggcatttttacctgtgatagagtcattcggattt
gagacagacctgaggtaccacacacaaggtcaagccttttgtctctcagtattcgaccac
tgggccatagttcctggagaccctttggacaagagcattgttttgcgacctcttgaaccc
gcaccaatacagcaccttgctcgggagttcatggtaaagacaaggcgtagaaagggaatg
agtgaagatgtgagcatcaacaagttcttcgacgaggctatggtggtggagctagctcag
caggctgccgatcttcatcagcagatgatataa
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