KEGG   Gossypium raimondii: 105792169
Entry
105792169         CDS       T04129                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1 isoform X1
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
gra  Gossypium raimondii
Pathway
gra03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:gra00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    105792169
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:gra03021]
    105792169
Enzymes [BR:gra01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     105792169
Transcription machinery [BR:gra03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     105792169
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_5 RNA_pol_Rpb1_4 RNA_pol_Rpb1_1
Other DBs
NCBI-GeneID: 105792169
NCBI-ProteinID: XP_012476045
UniProt: A0A0D2N1D6
LinkDB
Position
8:complement(54155010..54166795)
AA seq 1481 aa
MASMESDSSEEQENSTAFLTGIKFHVSNDADNENMSILEITAPSEVSDPRLGFPNFSNHC
TTCDARDMKQCEGHFGVIKFPYTILHPFFLSEVVHILNKICPGCKSIRKDLWMKGANSIA
RLLETKGCKYCVGNSIEWYPPMRFKITSKELFRKSAIMVEVSENSLMKVRKRGRQALPAD
YWDFIPKDQQQEEGFVKPGRRVLSHAQVRHLLKDVNPEFIKKFISEADSIFLNFFPVTPN
SHRVTEIMHTSSNAQRLIFDERTRVYKKLVDFRGLANELSSHVLECLKISKLHVEKPSTE
DSALIAALKKNKDSASNMSGLRYMKDVILGKRNDHCFRMVLTGNPNLKLSEIGIPCHVAE
KLQIAEQLNRWNEERLKTCCNLRILEKGEIRIRREGKLVRIRHNEKVQVGDTIYRPLNDG
DTVLINRPPSIHQHSLIALSVKVLPVNSVVSINPLICSPFRGDFDGDCLHGYVPQSINTR
VELSELVSLDRQLINGQSGRNLLSLSHDSLTAAYLVKEDGVLLNLFQMQQLEMFCPNHSP
LPAIVKAPLLSNPVWTGKQLFSMLFPPEFDYVFAPSGVVIHNGDLICSSEGSSWLRDADG
NLFQSLIKHYQGKVLDFLHAAQEVLCEWLSMRGLSVSLLDLYLSPDTDSQKNMMDEIFYG
LQEAEQTCNFKQLMVDSCQDFLAGNDEETNRFMVLDVEQMCYEKQRSAALSQASVDSFKQ
VFRDIQNLLYKYANKDNSLFTMFKAGSKGNLLKLVQHSMCLGLQHSLVPLSFRFPHQLSC
AAWNNQKSHILTQKVDDTDESAKKYIPYAVVESSFVKGLNPLECFVHSVTTRDTSFSDNA
DLPGTLSRRLMFFMRDLCAAYDGTVRNAYGDQVVQFCYNIDKGTFSPTSCPDKLVSQGSS
LPDGIGGQPVGSLSACAISEAAYSALDQPISLLESSPLLNLKRVLECGSKRSNADQTMSL
FLSGKLVRRRHGQEYGALEVKNHLERLIFKDIVSTVSIIFSPQMSSENRFSPWVCHFHVF
KDIVTRRRLTVHSIIDALHMHCTNAKRLWKINLPDMQVTSKACSVIDMENEDDTFCITVT
IVECKTSRIELDVIQDMVIPSLLEAVVKGFPEIKKVEILWNEDFRVPNSHKPAPGELYLR
VSVSGDFGITKLWSVLMNDCLQLMDIIDWTRSHPDNINQFCLAFGIDAGWRFFLNNMKSA
ISDTGKSILNEHLHLAANCLSATGEFVGLNSKGLKQQREHAFVSSPFMQACFSNPSACFV
KAAKTGVADNLQGTIDLLAWGRVPRIGTGGQFDIVYSMKDEELAEPVDVYKLLGDSINSK
KQDIEFEVPKVFNPTSEKHSSPFKGALRDSVFDEWKKIETKTRSLLRGRLTLNDVQRLER
NLKNILRKYPIDHRVSEADWDTLMMALYFHPHRVEKIGSGAKEIKVGHHPDHADSRCFFL
VRTDETTVDFSYRKCVVGALEIIAPCRAQSYKSKWLQHGSL
NT seq 4446 nt   +upstreamnt  +downstreamnt
atggcctccatggaaagtgactcatctgaagagcaagaaaattcaactgcctttctgact
ggcataaaatttcatgtctcgaacgacgctgataatgagaacatgtctatcttggaaatt
actgcacccagtgaggtgtctgatcctaggttggggtttccgaatttttctaatcattgc
accacttgtgatgccagagatatgaaacaatgcgaaggccattttggggttattaaattt
ccatacacaatactccatccattttttctttcagaagttgtacatatattaaataagatt
tgcccaggatgtaaatcgatccggaaagatctatggatgaagggtgctaattctatagcc
agattacttgaaaccaaggggtgtaaatattgtgttgggaattcaatagagtggtatcca
cccatgagattcaagataacctcgaaagagcttttcagaaaaagtgcaatcatggtagag
gtaagtgaaaactctttaatgaaggtccggaagagaggaaggcaagcattacctgcagat
tactgggactttattccaaaagatcaacaacaagaagaaggttttgtgaaaccaggtaga
agagtcctatcacatgcccaggttcgacatttgttgaaggacgttaatccagagttcatt
aaaaagtttatttcagaagcagactctattttcctcaatttttttcctgtgacacccaat
agtcaccgagtgacagaaatcatgcatacatcttctaatgcgcagcgattgatctttgat
gaaagaaccagggtttacaagaaactggttgacttcagagggctagcaaatgaattgagc
tctcatgtattggaatgcctaaaaatttctaagctgcatgtggagaagccatcaactgaa
gattctgcactcattgctgctctgaaaaagaataaagattctgcttccaacatgtcaggt
ttaagatatatgaaagatgttattcttgggaagagaaacgaccattgcttccgcatggtt
cttactggaaacccaaatcttaaactgtctgaaattggtatcccatgtcatgttgccgag
aaattgcaaatcgctgagcaactgaacaggtggaatgaggagagattgaaaacttgttgt
aatctgcgtattcttgagaagggtgagattcgcattaggagagaaggtaaattagttaga
attcgtcataatgaaaaggtccaagtaggggacactatctataggcccctaaatgatggg
gatacagtacttataaatagacctccttctatacatcagcactctctcattgcgctatct
gttaaagttctacctgtcaattcagttgtttcgataaacccactaatatgttcccctttt
cgtggagattttgatggtgattgccttcatggttatgttcctcagtccattaacacaaga
gttgagctcagtgagcttgtttctttggataggcagctaattaatggccaaagtggtcga
aatctgctttcactcagtcatgatagtttaacggctgcttatttggtcaaggaggacggg
gtactattgaacctgttccagatgcaacagctggaaatgttctgtcctaatcattcgcca
ttgccagccattgtcaaagctcctttgctaagtaatcctgtttggactggaaagcagtta
tttagcatgctctttcctcccgaatttgattatgtttttgcaccaagtggtgttgtaatc
cacaatggggatctcatatgttcttctgaagggtcttcttggctacgagatgctgacggc
aacctttttcaaagtcttattaagcattaccaaggaaaggtccttgactttttgcatgct
gctcaggaagttctttgtgagtggttgtcaatgaggggtttgagtgtttcactcttggac
ctatatctatctcctgacacagattcacaaaagaacatgatggatgaaatcttctatggt
ctgcaagaagcagagcagacatgtaacttcaagcagttaatggttgattcttgtcaagat
ttccttgctggaaacgatgaagaaactaataggttcatggttttggatgttgagcagatg
tgctatgagaaacaaagatctgctgcacttagccaagcttctgttgattcatttaagcaa
gttttccgtgatattcagaatttactctacaagtatgcaaataaagacaattcattattc
accatgttcaaagcagggagcaagggtaacttgctgaagttagtacagcatagtatgtgt
cttggattgcaacattcacttgtccctttatcattcagatttcctcatcagctctcatgt
gctgcatggaataatcaaaagtctcacatcttaacccaaaaggttgatgatactgatgag
tctgctaagaaatatatcccctatgctgtggtcgaaagttcgtttgtgaagggtctgaat
ccattagaatgttttgttcattcagtgactactcgagacacatctttcagtgacaatgct
gaccttcctgggacgctgtcacgaaggttgatgttcttcatgcgtgatctatgcgcagca
tatgatggaactgtgaggaatgcatatggagatcaggttgttcagttctgttataatatc
gataagggtacatttagtccaactagttgccctgacaaattagtaagtcagggcagtagt
cttcctgatggaattggtggacaacctgttggttcattatctgcctgtgccatttctgag
gctgcatatagtgcattggatcagccaattagtctacttgaatcttctccattgctgaac
ttgaagagggtccttgagtgtggttctaaaagaagcaatgctgaccagactatgtcacta
tttttatctggtaaacttgtaaggagaaggcacggtcaggagtatggagccttagaagtc
aagaatcatttggagaggctgatctttaaagatattgtgtctactgtctcaataatcttc
tctccacagatgtctagtgaaaaccgtttcagtccttgggtttgccattttcatgtgttt
aaggatattgtgacaaggaggcggctaacagtgcattctattattgatgctcttcacatg
cactgcaccaatgccaaaagactatggaaaatcaatttgcccgacatgcaagttacaagc
aaggcctgttctgttattgacatggaaaatgaagatgatacgttttgtatcactgtcaca
attgttgaatgtaaaacttctcgtatagaactggatgtgattcaagacatggtgatacct
tcccttctggaagcagtggtaaaaggattcccggagatcaagaaggtggaaattctatgg
aatgaggatttcagagtcccaaattctcataaacctgctcctggtgaactttacttgagg
gtttctgtatctggcgattttggtataacgaaactctggagtgtgcttatgaatgattgc
ctccaactaatggatataatcgattggacacggagccatccagataacattaatcagttt
tgcttggcattcggaatagatgctggatggagattctttctcaataatatgaagagtgca
atatcagatactggcaagtctatactaaatgaacatctacaccttgctgccaattgtctg
tcagctaccggggagtttgttggtttaaattcaaaaggcttgaaacaacaaagagaacat
gcatttgtctcttctcctttcatgcaagcatgcttttcaaaccctagtgcttgctttgtc
aaagctgcaaagactggagttgcggataatcttcaagggaccattgacctattggcttgg
ggaagggttcctcgtattgggactggtggacagtttgatatagtctattctatgaaggat
gaagagcttgcagaaccggttgatgtgtataagctgctaggagattctattaattccaag
aagcaggatatagagtttgaagtacctaaagtttttaaccctacatctgagaaacatagt
tctccgttcaagggagctcttcgtgactctgtctttgatgagtggaagaagattgaaacg
aaaacaaggtcactcttgagaggacgtctaaccttgaatgacgttcagaggcttgagcgt
aatttaaagaatattttgcgcaaatatcctattgatcaccgtgtaagtgaagctgactgg
gataccttgatgatggcgttgtactttcaccctcatagagttgagaagatcggatctgga
gccaaggaaataaaggtagggcatcatcccgatcatgcagacagtcgttgtttctttttg
gttagaacagatgagacaactgtagatttctcatatcggaaatgtgttgtcggtgcactc
gagatcattgctccttgtagggcacaatcctacaagtcaaaatggttacaacatggtagt
ttgtaa

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