KEGG   Gossypium raimondii: 105801902
Entry
105801902         CDS       T04129                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
gra  Gossypium raimondii
Pathway
gra03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:gra00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    105801902
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:gra03021]
    105801902
Enzymes [BR:gra01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     105801902
Transcription machinery [BR:gra03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     105801902
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_5 RNA_pol_Rpb1_1 RNA_pol_Rpb1_4 Anti-LPS-SCYG
Other DBs
NCBI-GeneID: 105801902
NCBI-ProteinID: XP_052478949
LinkDB
Position
11:61595943..61603636
AA seq 1482 aa
MTSIETDLSEEQEVLAATMTGIKFNVSGDEDNEKMSVMEIVASSQVSDPKLGFPNLRNHC
TTCDARDLGHCEGHFGVIKFPYPIINPYYLSEVVQILNKICLGCKSIRKDLLIKGDKSAS
KLRQRKGCKYCVGNSIDWYPPMTFKISSKELSKKSTIVVEVSEDSLMMVRKRGRQALPAD
YWDFIPKDQQEEEDGLMKPRRRVLSHAQVHYLLKDVDPEFIKKFIQNVDSIFLNCFPVTP
NSHRVTEITHRSSNSQRLIFDERTRLYKRLVDFRGVANELSSHVLECLKISKLFQEKPSN
EDNELILALTRNKDPVSNMSGLRYMKNVLLGKRNDHCFRMVLTGNPSLKLSEIGIPCPVA
ERLQIAEQLNKWNEERLKACCNLRILEKGEICIRREGTLVRIHHNEKIRLGDIIYRPLNN
GDIVLINRPPSIHQHSFIALSVKVLPVSSSVSINPLICSPFRGDFDGDCLHGYVPQSINT
RVELSELVSLNRQLINGQSGRNLLSLSHDSLSAAYLVNGDGVLLNLYEMQQLEMFCPNRS
PSPAIIKAPLLSNPVWTGKQLFSMLFPPELDYGFSPSDLVIRNGELITSSEGSSWFRDAD
GNLFESLIKNCRGKVLDFLHGAQEVLCEWLSMRGMSVSLLDLYLTPDSNSRKNMMDEIFY
GLQETELTCNFKQLMVDSFCDFLAGNNEEIDGFVGFDFERMCYEKQRSAAVNQASVDSFK
QVFRDIQNLSYKYANKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQRSVVPLSFRFPPKLS
CSEWNDLKSQGLTQSGDDSVESAKNFIPYAVIESSFMTGLNPLECFVHSVTSRDSSFSDH
ADLPGTLSRRLMFFLRDLCASYDGTVRNAYGGQVVQFSYGSDKGTSTATSFANEIQSQGS
ILPDGTGGQPVGSLSACAISEAAYSALDQPISLLETSPLLNLKRVLECGSRRRNSDQTMT
LFLSDKLGKGRHCFEYAALEIKNYLEKLIFSDIVSTVLITYSPQKSTENCFNPWVCHFHV
CKEIMKRRRLSVHSIIGSLQMHYANAKKLWKINLPDIQVTSNGRSCSHTDMPNKDDMFCI
TVTIVEPSKRSHIELDVILAIVLPSLLEAVVKGFPEIKKVQILWNDRFKVSKSHKTSPGE
LYLRVAVTGGFGKTKLWGMLMNDCLPIMDLIDWTRSHPDDINQFCSAYGIDSGWKFFLNN
LKSAISDTGKTILNEHLHLVADCLSVTGEFVGLNSKGLRLRQEHAFVSSPFMQACFSNPS
ASFVKAAKKGVSDNLQGTIDALSWGRVPCIGTGAQFDILYSMKDEMITEPVDVYNLLGNI
VGSQNQDVEFEVPQACNIKSEKYVSELMDALGDSAFERLKNIETKILREFLTLNDIQRLS
RTLKDILHKSPIGHRLSGADWNSAMMALYFHPRRDEKVGSGAQEIKVGYHPEHKNSRCFL
LARTDGAIVDFSYHKCVIGALEVIAPDKVQFYKSKWSQSGNL
NT seq 4449 nt   +upstreamnt  +downstreamnt
atgacctccattgaaacggacttgtctgaagagcaagaagtgctagctgccactatgact
ggcataaagtttaatgtatcgggtgatgaagataatgagaagatgtcagtcatggaaatt
gttgcatcaagtcaggtgtctgaccctaagctggggttcccaaatttgaggaatcattgc
accacctgtgacgccagagatttgggacattgtgaaggtcattttggggttattaaattt
ccgtacccaataatcaatccatattatctatcagaagttgtgcagatattaaataagatt
tgccttggatgtaaatcaattcgcaaagatctattgataaagggagataagtcggcatcc
aaactacgtcaacgcaaggggtgtaaatattgtgttgggaactcaattgactggtatcca
ccaatgacattcaagatatcctctaaagagctttccaaaaaaagcacaattgtggtagag
gtaagtgaagactctttaatgatggtccgaaagagaggaaggcaagccttacctgctgat
tattgggattttattccaaaagatcaacaagaagaagaagatggtttgatgaaaccacgt
cgaagggtcctatcacatgcacaggttcattatttactgaaggatgttgatccagagttc
attaaaaagttcattcagaatgtggactctattttcctcaattgctttcctgtgacaccc
aatagtcatcgagtgacggaaatcactcatagatcttctaattcacagcgcttgatcttt
gatgagagaactaggctttacaagagactggttgatttccgaggagtagctaatgaactg
agttcccatgtattggaatgcctaaaaatttcaaagctgttccaggagaagccatcaaat
gaagataatgaacttatccttgccctgacaaggaataaagatcctgtttctaacatgtct
ggtttaagatacatgaaaaacgttcttcttggaaagcgaaatgaccattgcttccgcatg
gttcttaccggaaatccaagtcttaaactatcggaaattggtataccatgtcctgttgca
gagaggttgcaaattgctgagcaactgaacaagtggaacgaggaaagattgaaagcttgc
tgtaatttgcgtattcttgagaagggtgagatttgtattaggagagaaggtacattagtt
agaattcatcataatgaaaagatccgactgggggacatcatctataggcccctaaataat
ggggatatcgtgcttataaacagacctccttctatacatcagcactctttcattgcccta
tctgtcaaagttctacctgtgagttcctctgtttcgataaacccccttatttgttcccct
tttcgtggagattttgacggtgattgccttcatggttatgttcctcagtccatcaacaca
agggttgagctcagcgagcttgtttctttgaataggcagctaattaatggccaaagtggt
cgaaatctactttcactgagtcatgatagtttatcagctgcttatttggtcaatggtgat
ggggttctcttgaacttgtacgaaatgcaacagcttgaaatgttctgtcccaatcgttca
ccgtcgccagcaatcatcaaagctcctttattgagtaatcctgtttggactggaaagcag
ttattcagcatgctctttcctcccgaattggattatggtttttctccaagtgatcttgtt
atccgtaatggggagcttataacttcatctgagggatcttcttggttccgagatgctgat
ggcaacctttttgaaagtctcattaaaaattgtcgaggaaaggtccttgattttttgcat
ggtgctcaggaagttctttgtgagtggttatcaatgaggggtatgagcgtttcactcttg
gacctatacctaactcctgattcaaattcacgaaagaacatgatggatgaaatcttctat
ggtctccaagaaacagagctgacttgcaactttaagcagttaatggttgattccttctgt
gatttccttgctggaaataatgaagaaattgatggttttgtgggttttgattttgagcgg
atgtgttatgagaagcaaagatcagctgcagttaatcaagcttctgttgattcttttaag
caagtttttcgagatatccagaatttatcatacaaatatgcaaataaagacaattcatta
ttgaccatgttcaaagcagggagcaagggtaacttgctgaagctagtgcagcatagcatg
tgtcttggactgcaacgttcagttgtacctttatcattcaggtttcctcctaaactctca
tgttctgaatggaatgatctaaaatctcagggcttaacccagagcggtgatgacagtgtt
gaatctgcaaagaatttcatcccatatgctgtgatcgaaagttcttttatgacaggcctg
aatccactagaatgttttgtgcattccgttactagtcgagacagttctttcagcgaccat
gctgaccttcctgggacactgtcacgaaggcttatgttcttcttgcgtgatctatgcgca
tcatatgacggaactgtgaggaatgcatatggaggtcaggttgttcagttcagctatggt
agtgataagggtacatctactgcaactagttttgctaatgaaatacaaagtcagggcagt
atcctacctgatggaacaggtggccaacctgttggttcattgtctgcctgtgccatttct
gaggctgcatatagtgctttggatcaaccgattagtctacttgaaacttcaccattgcta
aacctgaagagggtccttgaatgtggttctagaagaaggaattcagaccagactatgacg
ctatttttatcggataaacttggaaaggggagacattgtttcgagtatgcagctttagaa
atcaagaattatttggagaagttgatcttttcggatattgtatctactgtcttaataacc
tactccccgcagaagtcaactgaaaactgtttcaacccttgggtttgccattttcatgtg
tgcaaggagatcatgaaaaggaggcgcctttcagtgcattctattattggttctcttcag
atgcactacgccaatgccaaaaaattatggaaaatcaatttgcctgacatccaagttaca
agcaatggcaggtcttgttctcatactgatatgccaaataaagatgatatgttttgtatc
accgtcacgattgttgagccttccaaaaggtctcatatagaattggatgtgattctagcc
atagtgttaccttcccttctggaagcagttgtaaaaggattcccggagatcaagaaggtg
caaattttatggaatgatcgattcaaagtctcaaaatctcataaaacttctcctggtgaa
ctttacttgagggtagctgtaacaggtggttttggtaaaacaaaactctggggcatgctt
atgaatgattgccttccaataatggatttgatcgactggacacgtagtcatccagatgat
attaatcagttttgctcggcatatggcatagattctggatggaaattttttctcaataat
ttgaagagcgctatatcagataccggcaagactatactaaatgagcatttgcatcttgtc
gccgattgtctgtctgttaccggggagtttgttggcttaaactcaaaaggcttgagacta
cgacaagaacatgcatttgtctcatctccttttatgcaagcatgcttttcaaatcccagt
gcttcctttgtcaaagctgcaaagaaaggagtttcggataatcttcaggggaccattgat
gcattgtcatggggaagagttccttgcatcgggaccggtgcacagtttgatatactgtac
tctatgaaggatgaaatgatcaccgaaccggttgatgtgtataatcttcttggaaatatt
gttggttctcagaaccaagatgtagagtttgaagtaccccaagcttgtaacatcaagtcc
gagaaatatgtctctgaacttatggatgcacttggtgattctgcctttgaacggctgaaa
aatattgaaacaaaaatattgagagaatttctgacgttaaatgacattcagaggctttcg
cgaactttaaaggatatattgcacaagtctcctattggccaccggttaagcggagctgac
tggaattccgcaatgatggcattgtactttcatccgcgaagagatgagaaggtcggatct
ggagctcaagaaataaaggtagggtatcaccctgaacataaaaattctcgctgctttctt
ttggcaaggaccgatggggcaatcgtagatttctcgtatcataaatgcgttatcggggct
cttgaggtcatcgcccccgataaggtccaattctacaagtcaaaatggtcacaatccggt
aatctgtaa

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