Granulicella sp. 5B5: GOB94_12315
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Entry
GOB94_12315 CDS
T08433
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
grb
Granulicella sp. 5B5
Pathway
grb03030
DNA replication
grb03410
Base excision repair
grb03420
Nucleotide excision repair
grb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
grb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GOB94_12315 (ligA)
03410 Base excision repair
GOB94_12315 (ligA)
03420 Nucleotide excision repair
GOB94_12315 (ligA)
03430 Mismatch repair
GOB94_12315 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
grb03032
]
GOB94_12315 (ligA)
03400 DNA repair and recombination proteins [BR:
grb03400
]
GOB94_12315 (ligA)
Enzymes [BR:
grb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GOB94_12315 (ligA)
DNA replication proteins [BR:
grb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GOB94_12315 (ligA)
DNA repair and recombination proteins [BR:
grb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GOB94_12315 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GOB94_12315 (ligA)
MMR (mismatch excision repair)
DNA ligase
GOB94_12315 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GOB94_12315 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
HHH
PTCB-BRCT
BRCT_2
5_3_exonuc
Zn_ribbon_NUD
DUF72
Motif
Other DBs
NCBI-ProteinID:
QMV20385
UniProt:
A0A7D8FHK2
LinkDB
All DBs
Position
2906099..2908234
Genome browser
AA seq
711 aa
AA seq
DB search
MTVEAKMEALREELRHHEYLYYVLDQPEWTDAQYDARMNELKALEAEHPELVAADSPTQR
VGGKPKEGFVKVAHSKPMLSLDNAYNEEELRAWAERVQGGLAASEKPGFVCELKLDGLSL
ALTYEAGVKGTAVLKSGVTRGDGTVGEDVTSNVRTIRSVPLHVSAKRLKDAGLPQQFEVR
GEVVLPQAAFRKMNEEREAQGLAPAVNPRNAAAGTLRTLEPNIVAQRRLELFAYFLLSAG
GEGEPATGEFLLETQSAGLEALRRAGFLVNPNSRVVSSIDEVLSFIAEAEAKRDGLPYEI
DGVVIKVDSTAQQRRLGFTGKAPRWAIAYKFPARAAVTMLEEVLFQVGRTGKVTPVAALA
PVFVGGTTVTRATLHNADEIERLGLKIGDFVSVERGGDVIPKITEVVEDAAHPRGEREIV
FPEVCPRCGEALVREPGEVDLRCVNVSCPARLEEELRHFASRGVMNIEGMGESMVAQLLG
HTLAEVGTASLEASTDESEIEAEAPTKTALVHSIADVYDSTKVNRDTLLTLERIGEKTAD
ALLAQIEASKKQPLNRVLLGLGIRHVGERTAQALADEFGSIDALIGATEEELTKVNDIGP
KVAATVREFFTNERNLALVERLRGYGLTFTSKKRERGTKLEGMTFVLTGTLPTLTRDEAK
EKIEAAGGKVSGSVSKKTSYVVAGEEAGSKLEKAQQLGVAVLDEAGLLAML
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgacggttgaggcgaagatggaggcgctgcgggaagagctgcggcaccatgagtatctg
tattacgtgctggaccagccggagtggacagatgcgcagtacgatgcgcggatgaatgag
ctgaaggcgctggaggcagagcatcctgagctggtggctgcggactcaccgactcagcgg
gtgggcggcaagccgaaggaaggctttgtgaaggtggcccattcgaagcctatgctgtcg
ctggacaacgcgtacaacgaagaagagctacgggcgtgggcggagcgcgtgcagggtggg
ctggcggcgagtgagaagccggggtttgtgtgcgagctgaagctggatgggttgtcgctg
gcgctgacgtatgaggctggggtgaaggggactgctgtgctgaagagcggcgtgacgcgg
ggcgatggcacggtgggcgaggatgtgacgtcgaatgtgcggacgattcggagcgtgccg
ctgcatgtgagcgcgaagcggctgaaggatgcggggctgccacagcagtttgaggtgcgc
ggcgaggtggtgctgccgcaggcggctttcaggaagatgaatgaagaacgcgaggcgcag
gggctggcgccggcggtgaatccgaggaatgccgcggcggggacgctgaggacgctggag
ccgaatatcgtagcgcagcggcggttggagttgtttgcgtactttctgttgagtgccggc
ggcgaaggggaaccagcgacgggagagtttttgctggagacgcagagcgcagggctggag
gcgttgcgcagggctggatttctggtgaatccgaactcgcgggttgtgtcgtcgatcgac
gaagtactttcgtttatcgcggaggctgaggcgaagcgggatgggctgccgtatgagatt
gacggtgtggtgatcaaggtggattcgaccgcgcagcagcggcggctggggtttacgggc
aaggctccgcggtgggcgattgcctacaagtttccggcgcgggcagcggtgacgatgctg
gaggaagtgctctttcaggtgggacgcacagggaaggtgacgccggtggcggcgctggct
ccggtgtttgtgggtgggacgacggtgacgcgggcgacgctgcataatgcggatgagatt
gagcggctggggctgaagatcggcgatttcgtttcggtagagcgtggtggggatgtgatt
ccgaagatcacggaggtggtggaggatgcggcacatccgcgtggagaacgggagattgtg
tttcccgaggtgtgtccgcgctgcggagaggcgctggttcgcgagcctggtgaagtggat
ctgcggtgcgtgaatgtgagttgcccggcgcggctggaagaggagttgcggcacttcgct
tcgcgtggggtgatgaacatcgaaggcatgggtgagtcgatggtggcccagcttctggga
catacgctggccgaggtgggtaccgctagtctggaggcttcgacggatgagagtgagatt
gaagctgaggccccgacgaagaccgcgctggtgcactcgatcgccgatgtctacgattcg
acgaaggtgaaccgcgatacgctgctgacgctggaacgcatcggcgaaaagacggcagat
gcacttctggcccagatcgaggcttcgaagaagcagccgctcaacagagtgctgctgggg
ctgggcatccgccatgttggagaacgtacggcgcaggcgttggctgacgagttcggatcg
atcgatgcgttgatcggtgcgactgaagaagagctgacgaaggtgaatgacattgggccg
aaggttgcagccacggtgcgcgagttctttacgaacgaacgcaacctggcgctcgtggag
cggttgcgaggctatgggctgacgtttacttcaaagaagcgagagcgcggaacgaagttg
gagggcatgacgtttgtactgaccgggacgttgcccacgctgactcgcgatgaggcgaag
gagaagatcgaggctgcgggtgggaaggtttcgggatcggtgagtaagaagacgagttat
gtggttgccggggaagaggccgggtcgaagctggagaaagcgcagcagctgggggttgcg
gttttggatgaggctgggttgctggcgatgctttga
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