Gracilibacillus salitolerans: GI584_04140
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Entry
GI584_04140 CDS
T06279
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
grc
Gracilibacillus salitolerans
Pathway
grc03030
DNA replication
grc03410
Base excision repair
grc03420
Nucleotide excision repair
grc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
grc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GI584_04140 (ligA)
03410 Base excision repair
GI584_04140 (ligA)
03420 Nucleotide excision repair
GI584_04140 (ligA)
03430 Mismatch repair
GI584_04140 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
grc03032
]
GI584_04140 (ligA)
03400 DNA repair and recombination proteins [BR:
grc03400
]
GI584_04140 (ligA)
Enzymes [BR:
grc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GI584_04140 (ligA)
DNA replication proteins [BR:
grc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GI584_04140 (ligA)
DNA repair and recombination proteins [BR:
grc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GI584_04140 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GI584_04140 (ligA)
MMR (mismatch excision repair)
DNA ligase
GI584_04140 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GI584_04140 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
RNA_pol_A_CTD
PTCB-BRCT
HHH
Nlig-Ia
HHH_8
BRCT_2
cEGF
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
QGH33279
UniProt:
A0A5Q2TES4
LinkDB
All DBs
Position
825168..827180
Genome browser
AA seq
670 aa
AA seq
DB search
MTEQEARQKLDTLRDELNEYNYQYHVLDNPSVSDAEYDAKMKELKAMEAEFPDLVTPDSP
SQRIGGEPLDAFEKVTHRVPMLSLGNAFNEEELKDFDRRVREGLETDNVTYVCELKIDGL
AISLRYQDGLFVQGATRGDGTTGEDITSNLKTIRSIPLRIKDRSPIEVRGEAFMPQKAFV
SLNEAREKNEEEPFANPRNAAAGSLRQLDPKIAAKRHLDIFLYAVGEWESGSLETHSERL
TYLQELGFKTNPEWRKCKDIDEVIQYVEEWVEKRASLSYDIDGIVIKVDNLEAQEQLGFT
AKSPRWAVAYKFPAEEAVTKLTDIELSVGRTGVITPTAILDPVKVAGTTVQRASLHNEDL
IQEKDIRIGDTVVIKKAGDIIPEVVRVVEDMRTEKQQPFAMPEACPSCGDELVRLEEEVA
LRCINPNCPAQLKEGLIHFVSRLAMNIDGLGEKVVEQLFQAEYIHTIADLYRLEREELLK
LERMGEKSVENLLTAIENSKGNSLERVLFGLGIRYVGSKAARTLAAHFETIDHLQQASFE
DIVAVDEIGDKMADSIVHYFEDDQVKQLISELKDLGLNLTYKGPKVSEAAADSPFSGKTV
VLTGKLAIYTRQEAKQQIEALGGNVTGSVSKKTDLLIAGEDAGSKLAKAKKLDVEVWDEA
KLQEVLEEEA
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgacagagcaagaagcgcgtcaaaaattagacactttaagagatgaattaaatgaatat
aactatcaataccatgtgttagataatccaagtgtatcagatgctgaatatgatgcgaaa
atgaaggaacttaaagcaatggaagctgaatttcctgacttagttacacccgactcccct
tcacaacgcattggtggagagccattagatgcatttgagaaagtaacccatcgtgtaccg
atgttgagtctaggcaatgcttttaatgaagaagagttaaaagattttgatcgccgcgta
cgggaagggttagaaaccgataacgtcacctatgtttgtgaattaaaaatcgatggcctt
gcgatttcactgcgttatcaagatggcctttttgtgcaaggtgcgactcgtggtgacgga
actactggtgaggatattaccagtaacttgaaaacgataagaagtattccattgagaatt
aaggacaggtccccgattgaggttcgaggggaagcatttatgccgcagaaagcatttgtc
tctttaaatgaagcacgcgagaaaaatgaagaagaaccgtttgccaatccgagaaatgca
gcggcaggctcattgcgtcaacttgatcctaaaattgcggccaaacgtcatttagatatt
ttcttatatgcggtaggggaatgggaatctggttcgttggaaacccatagtgaacgtcta
acctatctacaagagttaggttttaaaaccaatccagaatggcgaaaatgcaaggatatt
gacgaagtaatccaatatgtagaagaatgggtagaaaaaagagcatctctttcctatgat
attgatggcattgtcataaaggttgataatcttgaagctcaggagcaacttggttttact
gcgaaaagcccgcgctgggcagtcgcttataaatttccagcagaagaggccgttaccaag
cttaccgatattgaattaagtgttggcagaacaggtgttatcacaccaactgctatattg
gatccggttaaagtggctggcactaccgtacaaagagcatcacttcacaatgaagattta
atccaagaaaaagatatccgtataggcgatacagtagtgatcaagaaagccggcgatatc
atacctgaagtggtccgtgttgtcgaagatatgcgaacagaaaagcagcagccttttgcc
atgccggaagcatgtccgtcttgtggggatgagctcgttcgtttagaagaggaagttgct
ttacgttgtataaacccgaactgtccggcacagttaaaggaaggtctgattcactttgta
tcgagacttgcgatgaacattgacggactcggtgagaaagtagtcgagcaactcttccag
gctgaatatattcatacaatcgccgatctttatcgattagagcgcgaagaattattaaaa
ctggagcgcatgggtgaaaagtcggtggaaaacttgttaactgccattgaaaattcaaag
ggaaactctctggaacgagtgctttttggccttggcattcgctatgttggttcgaaagct
gcaagaacattagcagctcattttgaaacaattgatcacttacagcaagcgagttttgaa
gacatagtagcggttgatgaaattggcgataaaatggcagattcgattgttcattatttt
gaagatgatcaagtgaaacagcttatttctgagttgaaagatttaggcttaaaccttact
tacaaaggacccaaagtaagtgaagcggcagcagatagtccgttttcaggcaagacggtt
gttttaacaggtaaattagcaatctatactagacaagaagcgaagcaacaaatcgaagca
cttggcggtaatgttactggaagtgtaagtaaaaagacagacttactgattgcaggggaa
gatgccggatctaaattagctaaggcgaaaaaattagatgtcgaagtatgggatgaagca
aaactccaagaagtattagaggaggaagcataa
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integrated database retrieval system
