Garra rufa (doctor fish): 141287645
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Entry
141287645 CDS
T11039
Symbol
kdm2ba
Name
(RefSeq) lysine (K)-specific demethylase 2Ba
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
grf Garra rufa (doctor fish)
Pathway
grf03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
141287645 (kdm2ba)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
grf03000
]
141287645 (kdm2ba)
04121 Ubiquitin system [BR:
grf04121
]
141287645 (kdm2ba)
03036 Chromosome and associated proteins [BR:
grf03036
]
141287645 (kdm2ba)
Enzymes [BR:
grf01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
141287645 (kdm2ba)
Transcription factors [BR:
grf03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
141287645 (kdm2ba)
Ubiquitin system [BR:
grf04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
141287645 (kdm2ba)
Chromosome and associated proteins [BR:
grf03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
141287645 (kdm2ba)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
141287645 (kdm2ba)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
F-box
DUF7885
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
141287645
NCBI-ProteinID:
XP_073675897
LinkDB
All DBs
Position
15:12267868..12283480
Genome browser
AA seq
857 aa
AA seq
DB search
MAMSLSADDEDYDSDTAEQQRLPNRPKPKMAASTAATTPAATTSSSTATAVKLPSNRTSS
GARRRRTRCRKCEACVRTECGECHFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCVV
CGEAGKEDTLDDEDEKFNAMLMECSICNEIVHPNCLKVKDAAGVLSFVFSCNSLACKQKR
GPGFKYASNLPGSLLREQKAGRDGREEGDQTSTGASSIKRKSEREETPRLKTEDLPSRLP
PLLSPSGLPRPRSEVPNFLRKKRKLFDDDEEEEEASAKKKPKKPWRPEEPLIPKLSHMKT
EEEEDNSDEEEDRQEKREPPRRSFKKDYSTVRKEEEHEEERREERDFRSLKEFNTLRKEE
DQEEEKEEDDEEEEEDNNGKRGRDSSPALKNISLSLESDASRCSSPRAGPSSEGSETQEK
APRARAKRHRRKPPNRQLSAELSKQLNMEIRRTEHSLANENQQPLKSEPEDSENEEPKRG
LRNGTAGNGGGGGGVERGAGGEGGGERPHLRAREMNGTSWELRHFYPPQITPLGLNRSSP
TVRPLPARSPPKCVQMERHVIRPPPICPPPDRLPLADGRNHIAPREAWLTIFSHLSHREL
CVCMRVCRTWNRWCCDKRLWTHIDLKRCKSITPLMLSGIIRRQPITLDLSWTNISKKQLS
WLINRLPGLRVLLLSGCSWVAVSALCTSSCPLLRTLDLQWVEGLKDPQMRDLLSPPTDNR
PGQMDTRSKLRNVTDLRLAGLDITDSSLRLIIKNMPLLSRLDLSYCNHINDQSVNLLTAA
GTTTRDSLTDVNLSVCNRVTDQSLSYFKRCGSICRIDLRFSKQVSRQACERFIAEMSVIV
PFQLQEDKLLQKLHSTP
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atggccatgtcactgagtgccgacgatgaggattacgactcggacacagccgaacagcaa
cggctacccaacagacccaagcccaagatggctgcatcaacggcagcaacgactccggcg
gcgaccacttcttcgtccactgcaacagcagtcaagctaccgtccaatcgaacctcctct
ggagctcgccgtaggcgcacacgatgtcgaaaatgcgaggcatgtgtgcggacagaatgt
ggagagtgtcacttctgtaaggacatgaagaagtttggaggacctggtcgaatgaaacag
tcttgcattatgagacaatgtatagcgcctgtattaccgcatacagcagtatgtgtggtg
tgtggtgaagctggtaaagaagacacacttgatgatgaagatgaaaaatttaatgccatg
ctcatggagtgctctatctgcaacgagattgtccatccaaactgcctcaaggtgaaggat
gcagctggggtattgtcttttgtattttcttgcaactctttggcctgcaagcaaaaacgg
ggcccaggctttaagtacgcatccaacctgccaggctccctgctgagggagcagaaagca
ggacgtgacggaagagaggaaggggaccagacatccacaggtgcttcatccatcaagagg
aaaagtgagagggaggaaactcccaggctgaagactgaagatctaccctctcgtcttccc
ccactcttgagccctagtggcctgccaagaccacgatctgaagtgcccaacttcttaagg
aagaagagaaagctatttgatgatgatgaagaggaagaggaggctagtgctaaaaagaag
ccgaagaaaccctggcggcctgaagagcctttgattcccaaactctctcacatgaaaacc
gaagaagaggaagacaactctgacgaggaggaagataggcaggagaagcgagaaccacct
cgtcgttcatttaagaaagactacagcacagtgagaaaagaggaagagcatgaggaagag
aggagggaggagagagatttcagatccttaaaggagttcaacaccctacggaaagaggaa
gaccaagaggaagaaaaggaggaagatgatgaagaagaggaggaggacaataatggcaaa
cgaggcagagatagcagccctgcactgaagaacatctccttatcgcttgagagtgacgca
tcacggtgcagctccccaagagcagggccgagcagcgaaggtagcgagacgcaagagaag
gcaccacgtgctcgggcgaagcgacaccggcgcaagcctcctaaccgccagctcagtgca
gaacttagcaagcagctcaacatggaaatccgtcgcacagagcactcactggccaatgag
aaccagcagcccctcaagagtgaacccgaagacagcgagaacgaggaaccaaaaagaggc
ttacgaaacggaactgcagggaatggaggaggaggtggaggagtggaaagaggagcaggt
ggagagggaggaggggaacgaccgcacttacgggcaagggagatgaatgggacatcttgg
gagctgcggcacttttaccctcctcagattaccccactaggcttgaaccgcagttcccct
acagtcagaccacttcctgcacgttctcctcccaagtgtgttcagatggagcgccatgtg
atccggccacctcctatctgccctccccctgataggctaccactagctgatgggcgcaat
cacattgctcctagagaagcctggttgactattttcagtcacctgagccatcgtgaactt
tgtgtgtgcatgcgagtgtgccgaacatggaatcgctggtgctgtgacaagagattatgg
actcatatcgatttgaagcgttgtaagtccatcaccccactgatgctaagtgggataatt
cgcaggcagcccatcactctggacctgagctggaccaacatctccaaaaagcaattaagc
tggcttattaaccgattaccaggactgagggtacttcttttgtcaggctgttcatgggtg
gctgtttcagctctctgcacatccagctgtcctttactacgtactctagacctgcaatgg
gtggaggggctcaaagacccccagatgagggacctactatcccctcctactgacaacaga
ccaggtcagatggacacacgcagcaaactacggaatgttactgacctgcgcctggctggt
ttggacatcacggacagctctctgcgtctcatcattaaaaatatgcctctactctcccgt
ctggacttgagttactgcaaccatatcaatgaccagtcagtaaacctgctgactgctgcg
gggaccaccactagagactccttaaccgacgtcaacctttctgtatgtaacagggtcact
gatcagtcgctgagctacttcaaacgctgtggaagcatctgccgcatcgacctgcgattt
tccaagcaggtgagccgacaggcatgcgagcgcttcattgctgagatgtcagtcatcgtt
cccttccaactgcaagaggataaactgctccaaaaacttcacagcaccccctag
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