Garra rufa (doctor fish): 141288289
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Entry
141288289 CDS
T11039
Symbol
sqstm1
Name
(RefSeq) sequestosome-1
KO
K14381
sequestosome 1
Organism
grf Garra rufa (doctor fish)
Pathway
grf04137
Mitophagy - animal
grf04140
Autophagy - animal
grf04217
Necroptosis
grf04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
141288289 (sqstm1)
04137 Mitophagy - animal
141288289 (sqstm1)
09143 Cell growth and death
04217 Necroptosis
141288289 (sqstm1)
04218 Cellular senescence
141288289 (sqstm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
grf04131
]
141288289 (sqstm1)
03029 Mitochondrial biogenesis [BR:
grf03029
]
141288289 (sqstm1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
grf04147
]
141288289 (sqstm1)
Membrane trafficking [BR:
grf04131
]
Autophagy
Mitophagy
Cargo receptors
141288289 (sqstm1)
Pexophagy
141288289 (sqstm1)
Aggrephagy
141288289 (sqstm1)
Xenophagy
141288289 (sqstm1)
ER-phagy
ER-phagy recepters
141288289 (sqstm1)
Other autophagy associated proteins
Midbophagy
141288289 (sqstm1)
Mitochondrial biogenesis [BR:
grf03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
141288289 (sqstm1)
Exosome [BR:
grf04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
141288289 (sqstm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UBA_5
ZZ
PB1
Med3
C1_2
Motif
Other DBs
NCBI-GeneID:
141288289
NCBI-ProteinID:
XP_073676509
LinkDB
All DBs
Position
16:complement(4727319..4733566)
Genome browser
AA seq
466 aa
AA seq
DB search
MSMTVKAYLIGKDDCNKEIRRFAVDQDVSTSFEYLKRKVLDVFVGLRTAPFQMSYKDDDG
DMIAFSSDDELMMGLALVKEDTFRVYIKQRKEHKRDSSPHGVPGFSFTPPHFSPPGPNPM
GPPPMGPPGGPHMGPHPHPHPHHPPMMHPGVTCDGCDGPVAGTRFKCTVCPDYDLCPSCQ
SKGLHKEHALLPIFHPMSNMFEWFPRGKMWRKMRHCMWANTQAQAQAQNQAQAQAQNQAQ
PGPSGVQQNQDASENMKENGSTASSQANMEYLKNIGEEVAAMLSPLGIDVDIDVEHEGKR
TKVTPTPPASSGPPSGRSESGSIGLLSRGSGPGSQATEESISEGTKGQKDQGSDEEWTHL
SSKEVDPSTGELQSLRLEQDGTDLPAPLSTVSSTSASQGPTGLREAALYPHLPQDADPRL
VESLSQMLSMGFNDEGGWLTRLLHTKNFDIGSALDAIQYSKPGPQK
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatgacagtgaaagcttaccttatcggtaaggacgactgcaacaaggagatccgt
cgctttgcggtggatcaggatgtctcaacaagttttgagtatttgaagcgaaaagtgctc
gatgtttttgtcgggctcaggactgcgccctttcagatgtcctataaagatgacgatggt
gacatgattgcattctcttctgacgatgagctaatgatgggtttggctcttgtgaaggaa
gacaccttccgtgtctacatcaagcaaaggaaggagcacaaacgtgattcctcacctcat
ggggttcctgggttctcattcaccccaccccactttagccccccaggaccaaatcctatg
ggcccacctccaatgggtcccccaggaggacctcatatggggcctcatcctcatcctcat
cctcatcaccctccaatgatgcacccaggggtgacctgcgatgggtgcgacgggccggtg
gctggaacacgtttcaagtgcaccgtttgccctgattatgatttgtgcccctcctgtcag
agcaaaggccttcacaaggagcatgctctcctgcccatctttcaccccatgtccaacatg
tttgagtggttccctcgtggcaagatgtggcgtaagatgagacactgcatgtgggcaaac
acccaggctcaggctcaggctcaaaatcaagctcaagctcaggcccaaaaccaggctcaa
ccaggtccatctggagtccaacaaaaccaggatgcttctgaaaacatgaaagagaacggt
tctactgcctcttcccaggctaatatggagtacctgaagaacattggagaggaagtggcg
gccatgttgagcccccttggcatcgatgtggacatcgacgttgagcatgagggcaagcgg
accaaagtcacaccaactcctcctgcctccagtgggccacctagtggtcggagtgagagt
ggctccatagggcttctctccagagggtctggtccaggaagtcaggctactgaagagagc
atcagtgagggaacaaaggggcagaaagaccaaggcagtgatgaggaatggactcatctg
agttctaaagaggtggacccctctacaggagagctgcagtccctcaggctggagcaggac
gggacagatctaccagccccgctgagcaccgtctctagcacaagtgcctcacagggtccc
actggtctccgcgaggctgctctctacccacaccttcctcaagatgcagaccccaggctt
gtggagtctctttctcagatgctgtccatgggcttcaacgatgagggtggatggttgacc
agactgctccacaccaagaattttgacattgggtctgccctggatgccatccagtactcc
aaacccggcccacagaagtag
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